New upstream version 2.12.0+ds
authorAaron M. Ucko <ucko@debian.org>
Thu, 2 Dec 2021 02:31:19 +0000 (21:31 -0500)
committerAaron M. Ucko <ucko@debian.org>
Thu, 2 Dec 2021 02:31:19 +0000 (21:31 -0500)
commit12379a63cc5affadbbcd17e292a8cb410c81dd91
treee854810ca0c0621c3cc524041b666476693865e0
parent58169a3aff60f35bc1e7b04f127b57b0b2f39ab2
New upstream version 2.12.0+ds
1924 files changed:
c++/compilers/unix/Clang.sh
c++/compilers/unix/GCC.sh
c++/compilers/vs2015/Makefile.WinMain.app.msvc [deleted file]
c++/compilers/vs2015/Makefile.wxWidgets.app.msvc [deleted file]
c++/compilers/vs2015/build.sh [deleted file]
c++/compilers/vs2015/build_exec.bat [deleted file]
c++/compilers/vs2015/build_util.sh [deleted file]
c++/compilers/vs2015/check.sh [deleted file]
c++/compilers/vs2015/configure.bat [deleted file]
c++/compilers/vs2015/datatool.bat [deleted file]
c++/compilers/vs2015/dll/build/UtilityProjects/_CONFIGURE_.vcxproj [deleted file]
c++/compilers/vs2015/dll/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [deleted file]
c++/compilers/vs2015/dll/build/UtilityProjects/configure._ [deleted file]
c++/compilers/vs2015/dll/build/UtilityProjects/configure_dialog._ [deleted file]
c++/compilers/vs2015/dll/build/all.bat [deleted file]
c++/compilers/vs2015/dll/build/all_gbench.bat [deleted file]
c++/compilers/vs2015/dll/build/all_gui.bat [deleted file]
c++/compilers/vs2015/dll/build/all_ncbi.bat [deleted file]
c++/compilers/vs2015/dll/build/gbench/UtilityProjects/_CONFIGURE_.vcxproj [deleted file]
c++/compilers/vs2015/dll/build/gbench/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [deleted file]
c++/compilers/vs2015/dll/build/gbench/UtilityProjects/configure._ [deleted file]
c++/compilers/vs2015/dll/build/gbench/UtilityProjects/configure_dialog._ [deleted file]
c++/compilers/vs2015/dll/build/gbench/configure_prebuild.bat [deleted file]
c++/compilers/vs2015/dll/build/gbench/gbench_install/gbench-install.vcxproj [deleted file]
c++/compilers/vs2015/dll/build/gbench/ncbi_gbench.sln [deleted file]
c++/compilers/vs2015/dll/build/gui/UtilityProjects/_CONFIGURE_.vcxproj [deleted file]
c++/compilers/vs2015/dll/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [deleted file]
c++/compilers/vs2015/dll/build/gui/UtilityProjects/configure._ [deleted file]
c++/compilers/vs2015/dll/build/gui/UtilityProjects/configure_dialog._ [deleted file]
c++/compilers/vs2015/dll/build/gui/ncbi_gui_dll.sln [deleted file]
c++/compilers/vs2015/dll/build/internal/gbench/gbench_install_internal/gbench-install-internal.vcxproj [deleted file]
c++/compilers/vs2015/dll/build/ncbi_cpp_dll.sln [deleted file]
c++/compilers/vs2015/dll/dll_main.cpp [deleted file]
c++/compilers/vs2015/dll/third_party_dll_install.mak [deleted file]
c++/compilers/vs2015/dll/third_party_dll_install.vcxproj [deleted file]
c++/compilers/vs2015/dll/third_party_msvcdll_install.vcxproj [deleted file]
c++/compilers/vs2015/install.sh [deleted file]
c++/compilers/vs2015/lock_ptb_config.bat [deleted file]
c++/compilers/vs2015/make.bat [deleted file]
c++/compilers/vs2015/make_ncbi.bat [deleted file]
c++/compilers/vs2015/msvcvars.bat [deleted file]
c++/compilers/vs2015/ncbi.rc [deleted file]
c++/compilers/vs2015/ncbilogo.ico [deleted file]
c++/compilers/vs2015/protoc.bat [deleted file]
c++/compilers/vs2015/ptb.bat [deleted file]
c++/compilers/vs2015/static/build/UtilityProjects/PTB.sln [deleted file]
c++/compilers/vs2015/static/build/UtilityProjects/_CONFIGURE_.vcxproj [deleted file]
c++/compilers/vs2015/static/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [deleted file]
c++/compilers/vs2015/static/build/UtilityProjects/configure._ [deleted file]
c++/compilers/vs2015/static/build/UtilityProjects/configure_dialog._ [deleted file]
c++/compilers/vs2015/static/build/all.bat [deleted file]
c++/compilers/vs2015/static/build/all_gui.bat [deleted file]
c++/compilers/vs2015/static/build/all_ncbi.bat [deleted file]
c++/compilers/vs2015/static/build/build-system/project_tree_builder/msbuild/msbuild_dataobj.lib.vcxproj [deleted file]
c++/compilers/vs2015/static/build/build-system/project_tree_builder/project_tree_builder.exe.vcxproj [deleted file]
c++/compilers/vs2015/static/build/corelib/xncbi.lib.vcxproj [deleted file]
c++/compilers/vs2015/static/build/gui/UtilityProjects/_CONFIGURE_.vcxproj [deleted file]
c++/compilers/vs2015/static/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [deleted file]
c++/compilers/vs2015/static/build/gui/UtilityProjects/configure._ [deleted file]
c++/compilers/vs2015/static/build/gui/UtilityProjects/configure_dialog._ [deleted file]
c++/compilers/vs2015/static/build/gui/ncbi_gui.sln [deleted file]
c++/compilers/vs2015/static/build/ncbi_cpp.sln [deleted file]
c++/compilers/vs2015/static/build/serial/datatool/datatool.exe.vcxproj [deleted file]
c++/compilers/vs2015/static/build/serial/xser.lib.vcxproj [deleted file]
c++/compilers/vs2015/static/build/util/regexp/regexp.lib.vcxproj [deleted file]
c++/compilers/vs2015/static/build/util/xregexp/xregexp.lib.vcxproj [deleted file]
c++/compilers/vs2015/static/build/util/xutil.lib.vcxproj [deleted file]
c++/compilers/vs2015/static/third_party_msvcstatic_install.vcxproj [deleted file]
c++/compilers/vs2015/static/third_party_static_install.mak [deleted file]
c++/compilers/vs2015/static/third_party_static_install.vcxproj [deleted file]
c++/compilers/vs2015/third_party_install.meta.mk [deleted file]
c++/compilers/vs2015/user/build/UtilityProjects/_CONFIGURE_.vcxproj [deleted file]
c++/compilers/vs2015/user/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [deleted file]
c++/compilers/vs2015/user/build/UtilityProjects/configure._ [deleted file]
c++/compilers/vs2015/user/build/UtilityProjects/configure_dialog._ [deleted file]
c++/compilers/vs2015/user/build/ncbi_user.sln [deleted file]
c++/compilers/vs2017/dll/build/UtilityProjects/_CONFIGURE_.vcxproj
c++/compilers/vs2017/dll/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj
c++/compilers/vs2017/dll/build/gbench/UtilityProjects/_CONFIGURE_.vcxproj
c++/compilers/vs2017/dll/build/gbench/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj
c++/compilers/vs2017/dll/build/gbench/gbench_install/gbench-install.vcxproj
c++/compilers/vs2017/dll/build/gui/UtilityProjects/_CONFIGURE_.vcxproj
c++/compilers/vs2017/dll/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj
c++/compilers/vs2017/dll/build/internal/gbench/gbench_install_internal/gbench-install-internal.vcxproj
c++/compilers/vs2017/dll/third_party_dll_install.vcxproj
c++/compilers/vs2017/dll/third_party_msvcdll_install.vcxproj
c++/compilers/vs2017/msvcvars.bat
c++/compilers/vs2017/ptb.bat
c++/compilers/vs2017/static/build/UtilityProjects/_CONFIGURE_.vcxproj
c++/compilers/vs2017/static/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj
c++/compilers/vs2017/static/build/build-system/project_tree_builder/msbuild/msbuild_dataobj.lib.vcxproj
c++/compilers/vs2017/static/build/build-system/project_tree_builder/project_tree_builder.exe.vcxproj
c++/compilers/vs2017/static/build/corelib/xncbi.lib.vcxproj
c++/compilers/vs2017/static/build/gui/UtilityProjects/_CONFIGURE_.vcxproj
c++/compilers/vs2017/static/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj
c++/compilers/vs2017/static/build/serial/datatool/datatool.exe.vcxproj
c++/compilers/vs2017/static/build/serial/xser.lib.vcxproj
c++/compilers/vs2017/static/build/util/regexp/regexp.lib.vcxproj
c++/compilers/vs2017/static/build/util/xregexp/xregexp.lib.vcxproj
c++/compilers/vs2017/static/build/util/xutil.lib.vcxproj
c++/compilers/vs2017/static/third_party_msvcstatic_install.vcxproj
c++/compilers/vs2017/static/third_party_static_install.vcxproj
c++/compilers/vs2017/user/build/UtilityProjects/_CONFIGURE_.vcxproj
c++/compilers/vs2017/user/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj
c++/compilers/vs2019/Makefile.WinMain.app.msvc [new file with mode: 0644]
c++/compilers/vs2019/Makefile.wxWidgets.app.msvc [new file with mode: 0644]
c++/compilers/vs2019/build.sh [new file with mode: 0644]
c++/compilers/vs2019/build_exec.bat [new file with mode: 0644]
c++/compilers/vs2019/build_util.sh [new file with mode: 0644]
c++/compilers/vs2019/check.sh [new file with mode: 0644]
c++/compilers/vs2019/configure.bat [new file with mode: 0644]
c++/compilers/vs2019/datatool.bat [new file with mode: 0644]
c++/compilers/vs2019/dll/build/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/dll/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/dll/build/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/vs2019/dll/build/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/vs2019/dll/build/all.bat [new file with mode: 0644]
c++/compilers/vs2019/dll/build/all_gbench.bat [new file with mode: 0644]
c++/compilers/vs2019/dll/build/all_gui.bat [new file with mode: 0644]
c++/compilers/vs2019/dll/build/all_ncbi.bat [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gbench/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gbench/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gbench/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gbench/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gbench/configure_prebuild.bat [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gbench/gbench_install/gbench-install.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gbench/ncbi_gbench.sln [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gui/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gui/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gui/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/vs2019/dll/build/gui/ncbi_gui_dll.sln [new file with mode: 0644]
c++/compilers/vs2019/dll/build/internal/gbench/gbench_install_internal/gbench-install-internal.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/dll/build/ncbi_cpp_dll.sln [new file with mode: 0644]
c++/compilers/vs2019/dll/dll_main.cpp [new file with mode: 0644]
c++/compilers/vs2019/dll/third_party_dll_install.mak [new file with mode: 0644]
c++/compilers/vs2019/dll/third_party_dll_install.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/dll/third_party_msvcdll_install.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/install.sh [new file with mode: 0644]
c++/compilers/vs2019/lock_ptb_config.bat [new file with mode: 0644]
c++/compilers/vs2019/make.bat [new file with mode: 0644]
c++/compilers/vs2019/make_ncbi.bat [new file with mode: 0644]
c++/compilers/vs2019/msvcvars.bat [new file with mode: 0644]
c++/compilers/vs2019/ncbi.rc [new file with mode: 0644]
c++/compilers/vs2019/ncbilogo.ico [new file with mode: 0644]
c++/compilers/vs2019/protoc.bat [new file with mode: 0644]
c++/compilers/vs2019/ptb.bat [new file with mode: 0644]
c++/compilers/vs2019/static/build/UtilityProjects/PTB.sln [new file with mode: 0644]
c++/compilers/vs2019/static/build/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/build/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/vs2019/static/build/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/vs2019/static/build/all.bat [new file with mode: 0644]
c++/compilers/vs2019/static/build/all_gui.bat [new file with mode: 0644]
c++/compilers/vs2019/static/build/all_ncbi.bat [new file with mode: 0644]
c++/compilers/vs2019/static/build/build-system/project_tree_builder/msbuild/msbuild_dataobj.lib.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/build/build-system/project_tree_builder/project_tree_builder.exe.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/build/corelib/xncbi.lib.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/build/gui/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/build/gui/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/vs2019/static/build/gui/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/vs2019/static/build/gui/ncbi_gui.sln [new file with mode: 0644]
c++/compilers/vs2019/static/build/ncbi_cpp.sln [new file with mode: 0644]
c++/compilers/vs2019/static/build/serial/datatool/datatool.exe.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/build/serial/xser.lib.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/build/util/regexp/regexp.lib.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/build/util/xregexp/xregexp.lib.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/build/util/xutil.lib.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/third_party_msvcstatic_install.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/static/third_party_static_install.mak [new file with mode: 0644]
c++/compilers/vs2019/static/third_party_static_install.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/third_party_install.meta.mk [new file with mode: 0644]
c++/compilers/vs2019/user/build/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/user/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/vs2019/user/build/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/vs2019/user/build/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/vs2019/user/build/ncbi_user.sln [new file with mode: 0644]
c++/compilers/xcode30_prj/datatool.sh
c++/compilers/xcode30_prj/ptb.sh
c++/include/algo/blast/api/blast_aux.hpp
c++/include/algo/blast/api/blast_node.hpp
c++/include/algo/blast/api/blast_options_builder.hpp
c++/include/algo/blast/api/blast_usage_report.hpp
c++/include/algo/blast/api/local_blast.hpp
c++/include/algo/blast/api/remote_blast.hpp
c++/include/algo/blast/blastinput/blast_args.hpp
c++/include/algo/blast/blastinput/blast_input.hpp
c++/include/algo/blast/blastinput/blastn_args.hpp
c++/include/algo/blast/blastinput/blastp_args.hpp
c++/include/algo/blast/blastinput/blastx_args.hpp
c++/include/algo/blast/blastinput/cmdline_flags.hpp
c++/include/algo/blast/blastinput/rpsblast_args.hpp
c++/include/algo/blast/blastinput/rpstblastn_args.hpp
c++/include/algo/blast/blastinput/tblastn_args.hpp
c++/include/algo/blast/core/blast_seqsrc.h
c++/include/algo/blast/core/blast_traceback.h
c++/include/algo/blast/format/blast_format.hpp
c++/include/algo/blast/igblast/igblast.hpp
c++/include/cgi/ncbires.hpp
c++/include/common/config/ncbiconf_msvc.h
c++/include/common/config/ncbiconf_xcode.h
c++/include/common/ncbi_export.h
c++/include/common/ncbi_package_ver.h
c++/include/common/ncbi_sanitizers.h [new file with mode: 0644]
c++/include/common/ncbi_source_ver.h
c++/include/common/ncbiconf_impl.h
c++/include/common/test_assert_impl.h
c++/include/connect/error_codes.hpp
c++/include/connect/impl/connect_misc.hpp [new file with mode: 0644]
c++/include/connect/impl/ncbi_uv_nghttp2.hpp [new file with mode: 0644]
c++/include/connect/ncbi_base64.h
c++/include/connect/ncbi_buffer.h
c++/include/connect/ncbi_conn_exception.hpp
c++/include/connect/ncbi_conn_stream.hpp
c++/include/connect/ncbi_conn_test.hpp
c++/include/connect/ncbi_connection.h
c++/include/connect/ncbi_connector.h
c++/include/connect/ncbi_connutil.h
c++/include/connect/ncbi_core.h
c++/include/connect/ncbi_ftp_connector.h
c++/include/connect/ncbi_gnutls.h
c++/include/connect/ncbi_http2_session.hpp [new file with mode: 0644]
c++/include/connect/ncbi_http_session.hpp
c++/include/connect/ncbi_localip.hpp
c++/include/connect/ncbi_mbedtls.h
c++/include/connect/ncbi_namedpipe.hpp
c++/include/connect/ncbi_namedpipe_connector.hpp
c++/include/connect/ncbi_pipe.hpp
c++/include/connect/ncbi_pipe_connector.hpp
c++/include/connect/ncbi_server_info.h
c++/include/connect/ncbi_service.hpp
c++/include/connect/ncbi_service_connector.h
c++/include/connect/ncbi_service_cxx.hpp
c++/include/connect/ncbi_socket.h
c++/include/connect/ncbi_socket.hpp
c++/include/connect/ncbi_usage_report.hpp
c++/include/connect/ncbi_util.h
c++/include/connect/services/grid_worker.hpp
c++/include/connect/services/impl/neticache_client_int.hpp
c++/include/connect/services/impl/netstorage_int.hpp
c++/include/connect/services/json_over_uttp.hpp
c++/include/connect/services/neticache_client.hpp
c++/include/connect/services/netservice_api.hpp
c++/include/connect/services/srv_connections.hpp
c++/include/corelib/ddumpable.hpp
c++/include/corelib/error_codes.hpp
c++/include/corelib/hash_impl/_hash_fun.h
c++/include/corelib/hash_impl/stlp_defs.hpp
c++/include/corelib/impl/ncbi_atomic_defs.h
c++/include/corelib/impl/ncbi_dbsvcmapper.hpp
c++/include/corelib/impl/ncbi_param_impl.hpp
c++/include/corelib/impl/rwstreambuf.hpp
c++/include/corelib/impl/stringutf8_deprecated.inl
c++/include/corelib/mswin_no_popup.h
c++/include/corelib/ncbi_param.hpp
c++/include/corelib/ncbi_pool_balancer.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_safe_static.hpp
c++/include/corelib/ncbi_system.hpp
c++/include/corelib/ncbi_url.hpp
c++/include/corelib/ncbiapp_api.hpp
c++/include/corelib/ncbiatomic.h
c++/include/corelib/ncbicntr.hpp
c++/include/corelib/ncbidiag.hpp
c++/include/corelib/ncbidiag.inl
c++/include/corelib/ncbiexpt.hpp
c++/include/corelib/ncbifile.hpp
c++/include/corelib/ncbimisc.hpp
c++/include/corelib/ncbimtx.hpp
c++/include/corelib/ncbiobj.hpp
c++/include/corelib/ncbistr.hpp
c++/include/corelib/ncbistre.hpp
c++/include/corelib/ncbisys.hpp
c++/include/corelib/ncbithr.hpp
c++/include/corelib/ncbitime.hpp
c++/include/corelib/ncbiutil.hpp
c++/include/corelib/plugin_manager.hpp
c++/include/corelib/reader_writer.hpp
c++/include/corelib/request_ctx.hpp
c++/include/corelib/rwstream.hpp
c++/include/corelib/test_boost.hpp
c++/include/corelib/version.hpp
c++/include/corelib/version_api.hpp
c++/include/dbapi/cache/dbapi_blob_cache.hpp [deleted file]
c++/include/dbapi/dbapi.hpp
c++/include/dbapi/driver/dbapi_driver_convert.hpp
c++/include/dbapi/driver/exception.hpp
c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp
c++/include/dbapi/driver/impl/dbapi_pool_balancer.hpp
c++/include/dbapi/driver/interfaces.hpp
c++/include/dbapi/driver/public.hpp
c++/include/dbapi/driver/types.hpp
c++/include/dbapi/error_codes.hpp
c++/include/dbapi/variant.hpp
c++/include/html/page.hpp
c++/include/misc/jsonwrapp/jsonwrapp11.hpp
c++/include/ncbi_pch.hpp
c++/include/ncbi_source_ver.h
c++/include/ncbiconf.h
c++/include/objects/biblio/MedlineUID.hpp
c++/include/objects/biblio/PmcID.hpp
c++/include/objects/biblio/PubMedId.hpp
c++/include/objects/blastdb/Blast_def_line.hpp
c++/include/objects/dbsnp/primary_track/impl/snpptis_impl.hpp
c++/include/objects/entrezgene/Gene_commentary.hpp
c++/include/objects/general/Dbtag.hpp
c++/include/objects/general/User_field.hpp
c++/include/objects/genomecoll/GC_Assembly.hpp
c++/include/objects/genomecoll/genomic_collections_cli.hpp
c++/include/objects/id2/id2_client.hpp
c++/include/objects/misc/error_codes.hpp
c++/include/objects/seq/Bioseq.hpp
c++/include/objects/seq/sofa_map.hpp [deleted file]
c++/include/objects/seqalign/Seq_align.hpp
c++/include/objects/seqfeat/Org_ref.hpp
c++/include/objects/seqfeat/SeqFeatData.hpp
c++/include/objects/seqfeat/Seq_feat.hpp
c++/include/objects/seqfeat/SubSource.hpp
c++/include/objects/seqloc/Seq_id.hpp
c++/include/objects/seqloc/Seq_loc.hpp
c++/include/objects/seqset/Seq_entry.hpp
c++/include/objects/taxon1/local_taxon.hpp
c++/include/objects/taxon1/taxon1.hpp
c++/include/objects/valerr/ValidErrItem.hpp
c++/include/objmgr/align_ci.hpp
c++/include/objmgr/annot_selector.hpp
c++/include/objmgr/annot_types_ci.hpp
c++/include/objmgr/bio_object_id.hpp
c++/include/objmgr/blob_id.hpp
c++/include/objmgr/data_loader.hpp
c++/include/objmgr/feat_ci.hpp
c++/include/objmgr/graph_ci.hpp
c++/include/objmgr/impl/annot_collector.hpp
c++/include/objmgr/impl/annot_object.hpp
c++/include/objmgr/impl/bioseq_info.hpp
c++/include/objmgr/impl/data_source.hpp
c++/include/objmgr/impl/scope_impl.hpp
c++/include/objmgr/impl/seq_annot_info.hpp
c++/include/objmgr/impl/seq_entry_info.hpp
c++/include/objmgr/impl/tse_info.hpp
c++/include/objmgr/scope.hpp
c++/include/objmgr/seq_table_ci.hpp
c++/include/objmgr/split/split_exceptions.hpp
c++/include/objmgr/tse_handle.hpp
c++/include/objmgr/util/autodef_feature_clause.hpp
c++/include/objmgr/util/autodef_options.hpp
c++/include/objmgr/util/create_defline.hpp
c++/include/objmgr/util/indexer.hpp
c++/include/objmgr/util/seq_loc_util.hpp
c++/include/objmgr/util/sequence.hpp
c++/include/objtools/align_format/align_format_util.hpp
c++/include/objtools/align_format/seqalignfilter.hpp
c++/include/objtools/align_format/showalign.hpp
c++/include/objtools/align_format/showdefline.hpp
c++/include/objtools/align_format/tabular.hpp
c++/include/objtools/align_format/taxFormat.hpp
c++/include/objtools/alnmgr/aln_seqid.hpp
c++/include/objtools/alnmgr/seqid_comp.hpp
c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp
c++/include/objtools/blast/gene_info_reader/gene_info.hpp
c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp
c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp
c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp
c++/include/objtools/blast/seqdb_reader/impl/seqdbcol.hpp
c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp
c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp
c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp
c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp
c++/include/objtools/blast/seqdb_reader/seqdb.hpp
c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp
c++/include/objtools/blast/seqdb_writer/build_db.hpp
c++/include/objtools/blast/seqdb_writer/taxid_set.hpp
c++/include/objtools/blast/seqdb_writer/writedb_lmdb.hpp
c++/include/objtools/cleanup/cleanup.hpp
c++/include/objtools/cleanup/cleanup_change.hpp
c++/include/objtools/cleanup/cleanup_message.hpp
c++/include/objtools/cleanup/cleanup_pub.hpp
c++/include/objtools/cleanup/fix_feature_id.hpp
c++/include/objtools/data_loaders/blastdb/bdbloader.hpp
c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp
c++/include/objtools/data_loaders/genbank/blob_id.hpp
c++/include/objtools/data_loaders/genbank/gbloader.hpp
c++/include/objtools/data_loaders/genbank/gbnative.hpp
c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp
c++/include/objtools/data_loaders/genbank/impl/processor.hpp
c++/include/objtools/data_loaders/genbank/impl/psg_loader_impl.hpp
c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp
c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp
c++/include/objtools/data_loaders/genbank/impl/request_result.hpp
c++/include/objtools/data_loaders/genbank/impl/wgsmaster.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/psg_loader.hpp
c++/include/objtools/data_loaders/genbank/reader.hpp
c++/include/objtools/data_loaders/genbank/seqref.hpp
c++/include/objtools/edit/apply_object.hpp
c++/include/objtools/edit/autodef_with_tax.hpp
c++/include/objtools/edit/capitalization_string.hpp
c++/include/objtools/edit/cds_fix.hpp
c++/include/objtools/edit/dblink_field.hpp
c++/include/objtools/edit/edit_error.hpp
c++/include/objtools/edit/feattable_edit.hpp
c++/include/objtools/edit/feature_propagate.hpp
c++/include/objtools/edit/gap_trim.hpp
c++/include/objtools/edit/gaps_edit.hpp
c++/include/objtools/edit/gb_block_field.hpp
c++/include/objtools/edit/gene_utils.hpp
c++/include/objtools/edit/loc_edit.hpp
c++/include/objtools/edit/parse_text_options.hpp
c++/include/objtools/edit/promote.hpp
c++/include/objtools/edit/pub_fix.hpp [new file with mode: 0644]
c++/include/objtools/edit/publication_edit.hpp
c++/include/objtools/edit/remote_updater.hpp
c++/include/objtools/edit/seq_edit.hpp
c++/include/objtools/edit/seq_entry_edit.hpp
c++/include/objtools/edit/source_edit.hpp
c++/include/objtools/edit/string_constraint.hpp
c++/include/objtools/edit/struc_comm_field.hpp
c++/include/objtools/error_codes.hpp
c++/include/objtools/eutils/api/efetch.hpp [new file with mode: 0644]
c++/include/objtools/eutils/api/egquery.hpp [new file with mode: 0644]
c++/include/objtools/eutils/api/ehistory.hpp [new file with mode: 0644]
c++/include/objtools/eutils/api/einfo.hpp [new file with mode: 0644]
c++/include/objtools/eutils/api/elink.hpp [new file with mode: 0644]
c++/include/objtools/eutils/api/epost.hpp [new file with mode: 0644]
c++/include/objtools/eutils/api/esearch.hpp [new file with mode: 0644]
c++/include/objtools/eutils/api/espell.hpp [new file with mode: 0644]
c++/include/objtools/eutils/api/esummary.hpp [new file with mode: 0644]
c++/include/objtools/eutils/api/eutils.hpp [new file with mode: 0644]
c++/include/objtools/eutils/esummary/DocSum.hpp [new file with mode: 0644]
c++/include/objtools/eutils/esummary/Item.hpp [new file with mode: 0644]
c++/include/objtools/format/flat_file_config.hpp
c++/include/objtools/format/flat_file_generator.hpp
c++/include/objtools/format/gather_items.hpp
c++/include/objtools/format/items/feature_item.hpp
c++/include/objtools/format/items/flat_qual_slots.hpp
c++/include/objtools/format/items/flat_seqloc.hpp
c++/include/objtools/format/items/reference_item.hpp
c++/include/objtools/format/items/source_item.hpp
c++/include/objtools/logging/listener.hpp
c++/include/objtools/logging/message.hpp
c++/include/objtools/pubseq_gateway/client/impl/misc.hpp
c++/include/objtools/pubseq_gateway/client/psg_client.hpp
c++/include/objtools/readers/agp_converter.hpp
c++/include/objtools/readers/agp_seq_entry.hpp
c++/include/objtools/readers/agp_util.hpp
c++/include/objtools/readers/aln_error_reporter.hpp
c++/include/objtools/readers/aln_formats.hpp
c++/include/objtools/readers/aln_reader.hpp
c++/include/objtools/readers/alnread.hpp
c++/include/objtools/readers/bed_reader.hpp
c++/include/objtools/readers/error_container.hpp
c++/include/objtools/readers/fasta.hpp
c++/include/objtools/readers/fasta_exception.hpp
c++/include/objtools/readers/fasta_reader_utils.hpp
c++/include/objtools/readers/featuredump.hpp
c++/include/objtools/readers/format_guess_ex.hpp
c++/include/objtools/readers/getfeature.hpp
c++/include/objtools/readers/gff2_data.hpp
c++/include/objtools/readers/gff2_reader.hpp
c++/include/objtools/readers/gff3_reader.hpp
c++/include/objtools/readers/gff3_sofa.hpp [deleted file]
c++/include/objtools/readers/gff_base_columns.hpp
c++/include/objtools/readers/gff_reader.hpp
c++/include/objtools/readers/gtf_reader.hpp
c++/include/objtools/readers/gvf_reader.hpp
c++/include/objtools/readers/line_error.hpp
c++/include/objtools/readers/message_listener.hpp
c++/include/objtools/readers/microarray_reader.hpp
c++/include/objtools/readers/mod_error.hpp
c++/include/objtools/readers/mod_reader.hpp
c++/include/objtools/readers/psl_reader.hpp
c++/include/objtools/readers/read_util.hpp
c++/include/objtools/readers/reader_base.hpp
c++/include/objtools/readers/reader_error_codes.hpp
c++/include/objtools/readers/reader_message.hpp
c++/include/objtools/readers/readfeat.hpp
c++/include/objtools/readers/rm_reader.hpp
c++/include/objtools/readers/seqid_validate.hpp
c++/include/objtools/readers/source_mod_parser.hpp
c++/include/objtools/readers/struct_cmt_reader.hpp
c++/include/objtools/readers/table_filter.hpp
c++/include/objtools/readers/ucscregion_reader.hpp
c++/include/objtools/readers/vcf_reader.hpp
c++/include/objtools/readers/wiggle_reader.hpp
c++/include/serial/grpc_integration/grpc_integration.hpp
c++/include/serial/grpc_integration/impl/grpc_support.hpp
c++/include/serial/impl/objistr.inl
c++/include/serial/impl/stdtypes.hpp
c++/include/serial/impl/stltypes.hpp
c++/include/serial/objistr.hpp
c++/include/serial/rpcbase.hpp
c++/include/serial/rpcbase_impl.hpp
c++/include/serial/serialbase.hpp
c++/include/serial/streamiter.hpp
c++/include/util/bitset/bm.h
c++/include/util/bitset/bmaggregator.h
c++/include/util/bitset/bmalgo.h
c++/include/util/bitset/bmalgo_impl.h
c++/include/util/bitset/bmalgo_similarity.h
c++/include/util/bitset/bmavx2.h
c++/include/util/bitset/bmblocks.h
c++/include/util/bitset/bmbmatrix.h
c++/include/util/bitset/bmbuffer.h
c++/include/util/bitset/bmconst.h
c++/include/util/bitset/bmdbg.h
c++/include/util/bitset/bmdef.h
c++/include/util/bitset/bmfunc.h
c++/include/util/bitset/bmfwd.h
c++/include/util/bitset/bmintervals.h
c++/include/util/bitset/bmrandom.h
c++/include/util/bitset/bmrs.h
c++/include/util/bitset/bmserial.h
c++/include/util/bitset/bmsparsevec.h
c++/include/util/bitset/bmsparsevec_algo.h
c++/include/util/bitset/bmsparsevec_compr.h
c++/include/util/bitset/bmsparsevec_parallel.h [new file with mode: 0644]
c++/include/util/bitset/bmsparsevec_serial.h
c++/include/util/bitset/bmsparsevec_util.h
c++/include/util/bitset/bmsse4.h
c++/include/util/bitset/bmstrsparsevec.h
c++/include/util/bitset/bmtask.h [new file with mode: 0644]
c++/include/util/bitset/bmthreadpool.h [new file with mode: 0644]
c++/include/util/bitset/bmtimer.h
c++/include/util/bitset/bmtrans.h
c++/include/util/bitset/bmundef.h
c++/include/util/bitset/bmutil.h
c++/include/util/bitset/bmvmin.h
c++/include/util/bitset/bmxor.h
c++/include/util/bitset/encoding.h
c++/include/util/cache/icache.hpp
c++/include/util/cache/icache_cf.hpp
c++/include/util/cache/icache_clean_thread.hpp
c++/include/util/compress/bzip2.hpp
c++/include/util/compress/compress.hpp
c++/include/util/compress/lzo.hpp
c++/include/util/compress/stream.hpp
c++/include/util/compress/zlib.hpp
c++/include/util/data_histogram.hpp
c++/include/util/format_guess.hpp
c++/include/util/impl/compile_time_bits.hpp
c++/include/util/limited_size_map.hpp
c++/include/util/profile/rtprofile.hpp [new file with mode: 0644]
c++/include/util/simple_buffer.hpp
c++/include/util/sync_queue.hpp
c++/include/util/xregexp/convert_dates_iso8601.hpp [new file with mode: 0644]
c++/scripts/common/check/check_exec_test.sh
c++/scripts/common/check/check_make_cfg.sh
c++/scripts/common/check/check_make_unix.sh
c++/scripts/common/check/check_make_unix_cmake.sh
c++/scripts/common/check/lsan.supp
c++/scripts/common/check/tsan.supp
c++/scripts/common/check/valgrind.supp
c++/scripts/common/common.sh
c++/scripts/common/impl/collect_outside_libs.sh
c++/scripts/common/impl/generate_all_objects.sh
c++/scripts/common/impl/install.sh
c++/scripts/common/new_cmake_project.bat
c++/scripts/common/new_cmake_project.sh
c++/scripts/projects/blast/Manifest
c++/scripts/projects/blast/components.link
c++/scripts/projects/blast/post_build/macosx/ncbi-blast.sh
c++/scripts/projects/blast/project.lst
c++/scripts/projects/datatool/ChangeLog
c++/scripts/projects/datatool/components.link
c++/scripts/projects/dispatcher/Manifest
c++/scripts/projects/dispatcher/project.lst
c++/scripts/projects/igblast/ChangeLog
c++/scripts/projects/igblast/Manifest
c++/scripts/projects/igblast/components.link
c++/scripts/projects/igblast/post_build/macosx/ncbi-igblast.sh
c++/scripts/projects/igblast/post_build/win/make_win.py
c++/scripts/projects/igblast/post_build/win/ncbi-blast.nsi
c++/scripts/projects/magicblast/Manifest
c++/scripts/projects/magicblast/components.link
c++/scripts/projects/magicblast/project.lst
c++/scripts/projects/ncbi_applog/ChangeLog
c++/scripts/projects/ncbi_applog/project.lst
c++/scripts/projects/netschedule/ChangeLog
c++/scripts/projects/netschedule/components.link
c++/scripts/projects/netstorage/project.lst
c++/scripts/projects/netstorage_gc/Manifest
c++/scripts/projects/netstorage_gc/project.lst
c++/scripts/projects/project_tree_builder/ChangeLog
c++/scripts/projects/project_tree_builder/components.link
c++/scripts/projects/psg_client/Manifest
c++/scripts/projects/psg_client/components.link [new file with mode: 0644]
c++/scripts/projects/pubseq_gateway/Manifest
c++/scripts/projects/pubseq_gateway/components.link [new file with mode: 0644]
c++/scripts/projects/pubseq_gateway/project.lst
c++/scripts/projects/python_ncbi_dbapi/ChangeLog
c++/scripts/projects/python_ncbi_dbapi/components.link
c++/scripts/projects/python_ncbi_dbapi/post_build/post_build.py
c++/scripts/projects/testres-kernel/ChangeLog [deleted file]
c++/scripts/projects/testres-kernel/LICENSE [deleted file]
c++/scripts/projects/testres-kernel/Manifest [deleted file]
c++/scripts/projects/testres-kernel/README [deleted file]
c++/scripts/projects/testres-kernel/components.link [deleted file]
c++/scripts/projects/testres-kernel/copy_modules.py [deleted file]
c++/scripts/projects/testres-kernel/project.lst [deleted file]
c++/scripts/projects/testres-scheduler/ChangeLog [deleted file]
c++/scripts/projects/testres-scheduler/LICENSE [deleted file]
c++/scripts/projects/testres-scheduler/Manifest [deleted file]
c++/scripts/projects/testres-scheduler/README [deleted file]
c++/scripts/projects/testres-scheduler/components.link [deleted file]
c++/scripts/projects/testres-scheduler/project.lst [deleted file]
c++/scripts/projects/testres-testapp/ChangeLog [deleted file]
c++/scripts/projects/testres-testapp/LICENSE [deleted file]
c++/scripts/projects/testres-testapp/Manifest [deleted file]
c++/scripts/projects/testres-testapp/README [deleted file]
c++/scripts/projects/testres-testapp/components.link [deleted file]
c++/scripts/projects/testres-testapp/project.lst [deleted file]
c++/scripts/projects/testres-testcgi/ChangeLog [deleted file]
c++/scripts/projects/testres-testcgi/LICENSE [deleted file]
c++/scripts/projects/testres-testcgi/Manifest [deleted file]
c++/scripts/projects/testres-testcgi/README [deleted file]
c++/scripts/projects/testres-testcgi/components.link [deleted file]
c++/scripts/projects/testres-testcgi/project.lst [deleted file]
c++/src/CMakeLists.txt
c++/src/Makefile.in
c++/src/algo/CMakeLists.txt
c++/src/algo/blast/CMakeLists.txt
c++/src/algo/blast/Makefile.blast_macros.mk
c++/src/algo/blast/api/CMakeLists.txt
c++/src/algo/blast/api/CMakeLists.xblast.lib.txt
c++/src/algo/blast/api/Makefile.xblast.lib
c++/src/algo/blast/api/blast_aux.cpp
c++/src/algo/blast/api/blast_aux_priv.cpp
c++/src/algo/blast/api/blast_aux_priv.hpp
c++/src/algo/blast/api/blast_node.cpp
c++/src/algo/blast/api/blast_objmgr_tools.cpp
c++/src/algo/blast/api/blast_options_builder.cpp
c++/src/algo/blast/api/blast_options_local_priv.cpp
c++/src/algo/blast/api/blast_setup_cxx.cpp
c++/src/algo/blast/api/blast_usage_report.cpp
c++/src/algo/blast/api/effsearchspace_calc.cpp
c++/src/algo/blast/api/local_blast.cpp
c++/src/algo/blast/api/psiblast_aux_priv.cpp
c++/src/algo/blast/api/remote_blast.cpp
c++/src/algo/blast/api/rps_aux.cpp
c++/src/algo/blast/api/search_strategy.cpp
c++/src/algo/blast/api/seqsrc_seqdb.cpp
c++/src/algo/blast/blastinput/CMakeLists.blastinput.lib.txt
c++/src/algo/blast/blastinput/CMakeLists.txt
c++/src/algo/blast/blastinput/blast_args.cpp
c++/src/algo/blast/blastinput/blast_input.cpp
c++/src/algo/blast/blastinput/blast_scope_src.cpp
c++/src/algo/blast/blastinput/blastn_args.cpp
c++/src/algo/blast/blastinput/blastp_args.cpp
c++/src/algo/blast/blastinput/blastx_args.cpp
c++/src/algo/blast/blastinput/cmdline_flags.cpp
c++/src/algo/blast/blastinput/igblastn_args.cpp
c++/src/algo/blast/blastinput/igblastp_args.cpp
c++/src/algo/blast/blastinput/rpsblast_args.cpp
c++/src/algo/blast/blastinput/rpstblastn_args.cpp
c++/src/algo/blast/blastinput/tblastn_args.cpp
c++/src/algo/blast/blastinput/unit_test/CMakeLists.blastinput_unit_test.app.txt
c++/src/algo/blast/blastinput/unit_test/CMakeLists.txt
c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp
c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp
c++/src/algo/blast/composition_adjustment/CMakeLists.composition_adjustment.lib.txt
c++/src/algo/blast/composition_adjustment/CMakeLists.txt
c++/src/algo/blast/core/CMakeLists.blast.lib.txt
c++/src/algo/blast/core/CMakeLists.txt
c++/src/algo/blast/core/blast_engine.c
c++/src/algo/blast/core/blast_kappa.c
c++/src/algo/blast/core/blast_seqsrc.c
c++/src/algo/blast/core/blast_traceback.c
c++/src/algo/blast/core/link_hsps.c
c++/src/algo/blast/dbindex/CMakeLists.txt
c++/src/algo/blast/dbindex/CMakeLists.xalgoblastdbindex.lib.txt
c++/src/algo/blast/dbindex/makeindex/CMakeLists.makeindex.app.txt
c++/src/algo/blast/dbindex/makeindex/CMakeLists.txt
c++/src/algo/blast/format/CMakeLists.txt
c++/src/algo/blast/format/CMakeLists.xblastformat.lib.txt
c++/src/algo/blast/format/blastxml2_format.cpp
c++/src/algo/blast/format/vecscreen_run.cpp
c++/src/algo/blast/igblast/CMakeLists.igblast.lib.txt
c++/src/algo/blast/igblast/CMakeLists.txt
c++/src/algo/blast/igblast/igblast.cpp
c++/src/algo/blast/proteinkmer/CMakeLists.proteinkmer.lib.txt
c++/src/algo/blast/proteinkmer/CMakeLists.txt
c++/src/algo/blast/proteinkmer/unit_test/CMakeLists.proteinkmer_unit_test.app.txt
c++/src/algo/blast/proteinkmer/unit_test/CMakeLists.txt
c++/src/algo/blast/proteinkmer/unit_test/data/nr_test.pkd [deleted file]
c++/src/algo/blast/proteinkmer/unit_test/data/nr_test.pki [deleted file]
c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp
c++/src/algo/blast/unit_tests/CMakeLists.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.aalookup_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.aascan_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.bl2seq_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.blast_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.blast_unit_test_util.lib.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.blastdiag_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.blastengine_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.blastextend_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.blastfilter_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.blasthits_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.blastoptions_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.blastsetup_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.delta_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.gapinfo_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.gencode_singleton_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.hspfilter_besthit_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.hspfilter_culling_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.hspstream_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.linkhsp_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.magicblast_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.msa2pssm_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.ntlookup_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.ntscan_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.optionshandle_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.phiblast_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.prelimsearch_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.psibl2seq_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.psiblast_iteration_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.psiblast_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.pssmcreate_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.pssmenginefreqratios_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.querydata_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.queryinfo_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.redoalignment_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.remote_blast_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.rmblast_blasthits_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.rmblast_traceback_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.rps_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.scoreblk_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.search_strategy_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.seqalign_util.lib.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.seqinfosrc_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.seqsrc_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.setupfactory_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.split_query_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.stat_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.subj_ranges_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.traceback_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.tracebacksearch_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.uniform_search_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/CMakeLists.version_reference_unit_test.app.txt
c++/src/algo/blast/unit_tests/api/Makefile.traceback_unit_test.app
c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp
c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp
c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp
c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp
c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp
c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp
c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp
c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp
c++/src/algo/blast/unit_tests/blast_format/CMakeLists.blast_format_unit_test.app.txt
c++/src/algo/blast/unit_tests/blast_format/CMakeLists.txt
c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp
c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp
c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp
c++/src/algo/blast/unit_tests/blast_format/data/in_test.txt
c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp
c++/src/algo/blast/unit_tests/blast_mt/blast_mt_unit_test.cpp [new file with mode: 0644]
c++/src/algo/blast/unit_tests/blastdb/CMakeLists.bdbloader_unit_test.app.txt
c++/src/algo/blast/unit_tests/blastdb/CMakeLists.txt
c++/src/algo/blast/unit_tests/blastdb/Makefile.bdbloader_unit_test.app
c++/src/algo/blast/unit_tests/seqdb_reader/CMakeLists.seqdb_lmdb_unit_test.app.txt
c++/src/algo/blast/unit_tests/seqdb_reader/CMakeLists.seqdb_unit_test.app.txt
c++/src/algo/blast/unit_tests/seqdb_reader/CMakeLists.txt
c++/src/algo/blast/unit_tests/seqdb_reader/Makefile.seqdb_unit_test.app
c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp
c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp
c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.ini
c++/src/algo/dustmask/CMakeLists.txt
c++/src/algo/dustmask/CMakeLists.xalgodustmask.lib.txt
c++/src/algo/segmask/CMakeLists.txt
c++/src/algo/segmask/CMakeLists.xalgosegmask.lib.txt
c++/src/algo/segmask/segmask.cpp
c++/src/algo/winmask/CMakeLists.txt
c++/src/algo/winmask/CMakeLists.xalgowinmask.lib.txt
c++/src/algo/winmask/seq_masker_istat_obinary.cpp
c++/src/algo/winmask/seq_masker_ostat.cpp
c++/src/algo/winmask/win_mask_config.cpp
c++/src/algo/winmask/win_mask_util.cpp
c++/src/app/CMakeLists.txt
c++/src/app/Makefile.in
c++/src/app/blast/CMakeLists.blast_app_util.lib.txt
c++/src/app/blast/CMakeLists.blast_formatter.app.txt
c++/src/app/blast/CMakeLists.blast_report.app.txt
c++/src/app/blast/CMakeLists.blastn.app.txt
c++/src/app/blast/CMakeLists.blastp.app.txt
c++/src/app/blast/CMakeLists.blastx.app.txt
c++/src/app/blast/CMakeLists.deltablast.app.txt
c++/src/app/blast/CMakeLists.psiblast.app.txt
c++/src/app/blast/CMakeLists.rpsblast.app.txt
c++/src/app/blast/CMakeLists.rpstblastn.app.txt
c++/src/app/blast/CMakeLists.seedtop.app.txt
c++/src/app/blast/CMakeLists.tblastn.app.txt
c++/src/app/blast/CMakeLists.tblastx.app.txt
c++/src/app/blast/CMakeLists.txt
c++/src/app/blast/Makefile.blastn.app
c++/src/app/blast/Makefile.blastp.app
c++/src/app/blast/Makefile.blastx.app
c++/src/app/blast/Makefile.tblastn.app
c++/src/app/blast/Makefile.update_blastdb.app
c++/src/app/blast/blast_app_util.cpp
c++/src/app/blast/blast_app_util.hpp
c++/src/app/blast/blast_formatter.cpp
c++/src/app/blast/blastn_app.cpp
c++/src/app/blast/blastn_node.cpp [new file with mode: 0644]
c++/src/app/blast/blastn_node.hpp [new file with mode: 0644]
c++/src/app/blast/blastp_app.cpp
c++/src/app/blast/blastp_node.cpp [new file with mode: 0644]
c++/src/app/blast/blastp_node.hpp [new file with mode: 0644]
c++/src/app/blast/blastx_app.cpp
c++/src/app/blast/blastx_node.cpp [new file with mode: 0644]
c++/src/app/blast/blastx_node.hpp [new file with mode: 0644]
c++/src/app/blast/deltablast_app.cpp
c++/src/app/blast/get_species_taxids.sh
c++/src/app/blast/legacy_blast.pl
c++/src/app/blast/psiblast_app.cpp
c++/src/app/blast/rpsblast_app.cpp
c++/src/app/blast/rpsblast_node.cpp
c++/src/app/blast/rpsblast_node.hpp
c++/src/app/blast/rpstblastn_app.cpp
c++/src/app/blast/rpstblastn_node.cpp
c++/src/app/blast/rpstblastn_node.hpp
c++/src/app/blast/tblastn_app.cpp
c++/src/app/blast/tblastn_node.cpp [new file with mode: 0644]
c++/src/app/blast/tblastn_node.hpp [new file with mode: 0644]
c++/src/app/blast/tblastx_app.cpp
c++/src/app/blast/update_blastdb.pl
c++/src/app/blastdb/CMakeLists.blastdb_aliastool.app.txt
c++/src/app/blastdb/CMakeLists.blastdb_convert.app.txt
c++/src/app/blastdb/CMakeLists.blastdb_path.app.txt
c++/src/app/blastdb/CMakeLists.blastdbcheck.app.txt
c++/src/app/blastdb/CMakeLists.blastdbcmd.app.txt
c++/src/app/blastdb/CMakeLists.blastdbcp.app.txt
c++/src/app/blastdb/CMakeLists.convert2blastmask.app.txt
c++/src/app/blastdb/CMakeLists.makeblastdb.app.txt
c++/src/app/blastdb/CMakeLists.makeprofiledb.app.txt
c++/src/app/blastdb/CMakeLists.txt
c++/src/app/blastdb/blastdb_aliastool.cpp
c++/src/app/blastdb/blastdb_convert.cpp
c++/src/app/blastdb/blastdbcheck.cpp
c++/src/app/blastdb/blastdbcmd.cpp
c++/src/app/blastdb/blastdbcp.cpp
c++/src/app/blastdb/convert2blastmask.cpp
c++/src/app/blastdb/makeblastdb.cpp
c++/src/app/blastdb/makeprofiledb.cpp
c++/src/app/dustmasker/CMakeLists.dustmasker.app.txt
c++/src/app/dustmasker/CMakeLists.txt
c++/src/app/segmasker/CMakeLists.segmasker.app.txt
c++/src/app/segmasker/CMakeLists.txt
c++/src/app/winmasker/CMakeLists.txt
c++/src/app/winmasker/CMakeLists.winmasker.app.txt
c++/src/app/winmasker/win_mask_app.cpp
c++/src/build-system/Makefile.dll.in
c++/src/build-system/Makefile.mk.in
c++/src/build-system/Makefile.mk.in.msvc
c++/src/build-system/Makefile.protobuf.in
c++/src/build-system/Makefile.rules_with_autodep.in
c++/src/build-system/Makefile.xcode.tmpl
c++/src/build-system/cmake/CMake.NCBIComponents.cmake
c++/src/build-system/cmake/CMake.NCBIComponentsMSVC.cmake
c++/src/build-system/cmake/CMake.NCBIComponentsUNIX.cmake
c++/src/build-system/cmake/CMake.NCBIComponentsUNIXex.cmake
c++/src/build-system/cmake/CMake.NCBIComponentsXCODE.cmake
c++/src/build-system/cmake/CMake.NCBIptb.cmake
c++/src/build-system/cmake/CMake.NCBIptb.ctest.cmake
c++/src/build-system/cmake/CMake.NCBIptb.datatool.cmake
c++/src/build-system/cmake/CMake.NCBIptb.install.cmake
c++/src/build-system/cmake/CMake.NCBIptb.ncbi.cmake
c++/src/build-system/cmake/CMake.NCBIptb.ntest.cmake
c++/src/build-system/cmake/CMake.NCBItoolkit.cmake
c++/src/build-system/cmake/CMakeChecks.basic-checks.cmake
c++/src/build-system/cmake/CMakeChecks.boost.cmake
c++/src/build-system/cmake/CMakeChecks.cmake
c++/src/build-system/cmake/CMakeChecks.compiler.cmake
c++/src/build-system/cmake/CMakeChecks.final-message.cmake
c++/src/build-system/cmake/CMakeChecks.os.cmake
c++/src/build-system/cmake/CMakeChecks.wxwidgets.cmake
c++/src/build-system/cmake/CMakeLists.top_builddir.txt
c++/src/build-system/cmake/CMakeMacros.cmake
c++/src/build-system/cmake/TestDriver.cmake
c++/src/build-system/cmake/cmClang.sh
c++/src/build-system/cmake/cmGCC.sh
c++/src/build-system/cmake/cmICC.sh
c++/src/build-system/cmake/cmLLVM-GCC.sh
c++/src/build-system/cmake/cmake-cfg-unix.sh
c++/src/build-system/cmake/cmake-cfg-vs.bat
c++/src/build-system/cmake/cmake-cfg-xcode.sh
c++/src/build-system/cmake/cmake_configure_ext_gpipe.sh
c++/src/build-system/cmake/config.cmake.h.in
c++/src/build-system/config.h.in
c++/src/build-system/configure
c++/src/build-system/configure.ac
c++/src/build-system/datatool_version.txt
c++/src/build-system/helpers/run_with_lock.c
c++/src/build-system/install.sh.in
c++/src/build-system/library_relations.txt
c++/src/build-system/ncbi_package_version
c++/src/build-system/project_tree_builder.ini
c++/src/build-system/project_tree_builder/msvc_configure.cpp
c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp
c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp
c++/src/build-system/project_tree_builder/msvc_site.cpp
c++/src/build-system/project_tree_builder/proj_builder_app.cpp
c++/src/build-system/project_tree_builder/proj_tree.cpp
c++/src/build-system/project_tree_builder/proj_tree_builder.cpp
c++/src/build-system/project_tree_builder/resolver.cpp
c++/src/build-system/ptb_version.txt
c++/src/build-system/relocate.sh.in
c++/src/cgi/CMakeLists.cgi.lib.txt
c++/src/cgi/CMakeLists.fcgi.lib.txt
c++/src/cgi/CMakeLists.txt
c++/src/cgi/cgiapp.cpp
c++/src/cgi/ncbicgi.cpp
c++/src/connect/CMakeLists.connect.lib.txt
c++/src/connect/CMakeLists.connssl.lib.txt
c++/src/connect/CMakeLists.txt
c++/src/connect/CMakeLists.xconnect.lib.txt
c++/src/connect/CMakeLists.xthrserv.lib.txt
c++/src/connect/CMakeLists.xxconnect.lib.txt
c++/src/connect/CMakeLists.xxconnect2.lib.txt [new file with mode: 0644]
c++/src/connect/Makefile.connect.lib
c++/src/connect/Makefile.in
c++/src/connect/Makefile.xconnect.lib
c++/src/connect/Makefile.xxconnect.lib
c++/src/connect/Makefile.xxconnect.lib.unix
c++/src/connect/Makefile.xxconnect2.lib [new file with mode: 0644]
c++/src/connect/Makefile.xxconnect2.mk [new file with mode: 0644]
c++/src/connect/connect_misc.cpp [new file with mode: 0644]
c++/src/connect/connect_misc_impl.hpp [new file with mode: 0644]
c++/src/connect/mbedtls/aes.c
c++/src/connect/mbedtls/aesni.c
c++/src/connect/mbedtls/arc4.c
c++/src/connect/mbedtls/asn1parse.c
c++/src/connect/mbedtls/asn1write.c
c++/src/connect/mbedtls/base64.c
c++/src/connect/mbedtls/bignum.c
c++/src/connect/mbedtls/blowfish.c
c++/src/connect/mbedtls/camellia.c
c++/src/connect/mbedtls/ccm.c
c++/src/connect/mbedtls/certs.c
c++/src/connect/mbedtls/cipher.c
c++/src/connect/mbedtls/cipher_wrap.c
c++/src/connect/mbedtls/cmac.c
c++/src/connect/mbedtls/ctr_drbg.c
c++/src/connect/mbedtls/debug.c
c++/src/connect/mbedtls/des.c
c++/src/connect/mbedtls/dhm.c
c++/src/connect/mbedtls/ecdh.c
c++/src/connect/mbedtls/ecdsa.c
c++/src/connect/mbedtls/ecjpake.c
c++/src/connect/mbedtls/ecp.c
c++/src/connect/mbedtls/ecp_curves.c
c++/src/connect/mbedtls/entropy.c
c++/src/connect/mbedtls/entropy_poll.c
c++/src/connect/mbedtls/error.c
c++/src/connect/mbedtls/gcm.c
c++/src/connect/mbedtls/gpl-2.0.txt [new file with mode: 0644]
c++/src/connect/mbedtls/havege.c
c++/src/connect/mbedtls/hmac_drbg.c
c++/src/connect/mbedtls/mbedtls/aes.h
c++/src/connect/mbedtls/mbedtls/aesni.h
c++/src/connect/mbedtls/mbedtls/arc4.h
c++/src/connect/mbedtls/mbedtls/asn1.h
c++/src/connect/mbedtls/mbedtls/asn1write.h
c++/src/connect/mbedtls/mbedtls/base64.h
c++/src/connect/mbedtls/mbedtls/bignum.h
c++/src/connect/mbedtls/mbedtls/blowfish.h
c++/src/connect/mbedtls/mbedtls/bn_mul.h
c++/src/connect/mbedtls/mbedtls/camellia.h
c++/src/connect/mbedtls/mbedtls/ccm.h
c++/src/connect/mbedtls/mbedtls/certs.h
c++/src/connect/mbedtls/mbedtls/check_config.h
c++/src/connect/mbedtls/mbedtls/cipher.h
c++/src/connect/mbedtls/mbedtls/cipher_internal.h
c++/src/connect/mbedtls/mbedtls/cmac.h
c++/src/connect/mbedtls/mbedtls/compat-1.3.h
c++/src/connect/mbedtls/mbedtls/config.h
c++/src/connect/mbedtls/mbedtls/ctr_drbg.h
c++/src/connect/mbedtls/mbedtls/debug.h
c++/src/connect/mbedtls/mbedtls/des.h
c++/src/connect/mbedtls/mbedtls/dhm.h
c++/src/connect/mbedtls/mbedtls/ecdh.h
c++/src/connect/mbedtls/mbedtls/ecdsa.h
c++/src/connect/mbedtls/mbedtls/ecjpake.h
c++/src/connect/mbedtls/mbedtls/ecp.h
c++/src/connect/mbedtls/mbedtls/ecp_internal.h
c++/src/connect/mbedtls/mbedtls/entropy.h
c++/src/connect/mbedtls/mbedtls/entropy_poll.h
c++/src/connect/mbedtls/mbedtls/error.h
c++/src/connect/mbedtls/mbedtls/gcm.h
c++/src/connect/mbedtls/mbedtls/havege.h
c++/src/connect/mbedtls/mbedtls/hmac_drbg.h
c++/src/connect/mbedtls/mbedtls/md.h
c++/src/connect/mbedtls/mbedtls/md2.h
c++/src/connect/mbedtls/mbedtls/md4.h
c++/src/connect/mbedtls/mbedtls/md5.h
c++/src/connect/mbedtls/mbedtls/md_internal.h
c++/src/connect/mbedtls/mbedtls/memory_buffer_alloc.h
c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h
c++/src/connect/mbedtls/mbedtls/net.h
c++/src/connect/mbedtls/mbedtls/net_sockets.h
c++/src/connect/mbedtls/mbedtls/oid.h
c++/src/connect/mbedtls/mbedtls/padlock.h
c++/src/connect/mbedtls/mbedtls/pem.h
c++/src/connect/mbedtls/mbedtls/pk.h
c++/src/connect/mbedtls/mbedtls/pk_internal.h
c++/src/connect/mbedtls/mbedtls/pkcs11.h
c++/src/connect/mbedtls/mbedtls/pkcs12.h
c++/src/connect/mbedtls/mbedtls/pkcs5.h
c++/src/connect/mbedtls/mbedtls/platform.h
c++/src/connect/mbedtls/mbedtls/platform_time.h
c++/src/connect/mbedtls/mbedtls/ripemd160.h
c++/src/connect/mbedtls/mbedtls/rsa.h
c++/src/connect/mbedtls/mbedtls/rsa_internal.h
c++/src/connect/mbedtls/mbedtls/sha1.h
c++/src/connect/mbedtls/mbedtls/sha256.h
c++/src/connect/mbedtls/mbedtls/sha512.h
c++/src/connect/mbedtls/mbedtls/ssl.h
c++/src/connect/mbedtls/mbedtls/ssl_cache.h
c++/src/connect/mbedtls/mbedtls/ssl_ciphersuites.h
c++/src/connect/mbedtls/mbedtls/ssl_cookie.h
c++/src/connect/mbedtls/mbedtls/ssl_internal.h
c++/src/connect/mbedtls/mbedtls/ssl_ticket.h
c++/src/connect/mbedtls/mbedtls/threading.h
c++/src/connect/mbedtls/mbedtls/timing.h
c++/src/connect/mbedtls/mbedtls/version.h
c++/src/connect/mbedtls/mbedtls/x509.h
c++/src/connect/mbedtls/mbedtls/x509_crl.h
c++/src/connect/mbedtls/mbedtls/x509_crt.h
c++/src/connect/mbedtls/mbedtls/x509_csr.h
c++/src/connect/mbedtls/mbedtls/xtea.h
c++/src/connect/mbedtls/mbedtls_md5.c
c++/src/connect/mbedtls/mbedtls_version.c
c++/src/connect/mbedtls/md.c
c++/src/connect/mbedtls/md2.c
c++/src/connect/mbedtls/md4.c
c++/src/connect/mbedtls/md_wrap.c
c++/src/connect/mbedtls/memory_buffer_alloc.c
c++/src/connect/mbedtls/net_sockets.c
c++/src/connect/mbedtls/oid.c
c++/src/connect/mbedtls/padlock.c
c++/src/connect/mbedtls/pem.c
c++/src/connect/mbedtls/pk.c
c++/src/connect/mbedtls/pk_wrap.c
c++/src/connect/mbedtls/pkcs11.c
c++/src/connect/mbedtls/pkcs12.c
c++/src/connect/mbedtls/pkcs5.c
c++/src/connect/mbedtls/pkparse.c
c++/src/connect/mbedtls/pkwrite.c
c++/src/connect/mbedtls/platform.c
c++/src/connect/mbedtls/ripemd160.c
c++/src/connect/mbedtls/rsa.c
c++/src/connect/mbedtls/rsa_internal.c
c++/src/connect/mbedtls/sha1.c
c++/src/connect/mbedtls/sha256.c
c++/src/connect/mbedtls/sha512.c
c++/src/connect/mbedtls/ssl_cache.c
c++/src/connect/mbedtls/ssl_ciphersuites.c
c++/src/connect/mbedtls/ssl_cli.c
c++/src/connect/mbedtls/ssl_cookie.c
c++/src/connect/mbedtls/ssl_srv.c
c++/src/connect/mbedtls/ssl_ticket.c
c++/src/connect/mbedtls/ssl_tls.c
c++/src/connect/mbedtls/threading.c
c++/src/connect/mbedtls/timing.c
c++/src/connect/mbedtls/version_features.c
c++/src/connect/mbedtls/x509.c
c++/src/connect/mbedtls/x509_create.c
c++/src/connect/mbedtls/x509_crl.c
c++/src/connect/mbedtls/x509_crt.c
c++/src/connect/mbedtls/x509_csr.c
c++/src/connect/mbedtls/x509write_crt.c
c++/src/connect/mbedtls/x509write_csr.c
c++/src/connect/mbedtls/xtea.c
c++/src/connect/ncbi_ansi_ext.c
c++/src/connect/ncbi_base64.c
c++/src/connect/ncbi_buffer.c
c++/src/connect/ncbi_conn_stream.cpp
c++/src/connect/ncbi_conn_streambuf.cpp
c++/src/connect/ncbi_conn_streambuf.hpp
c++/src/connect/ncbi_conn_test.cpp
c++/src/connect/ncbi_connection.c
c++/src/connect/ncbi_connector.c
c++/src/connect/ncbi_connssl.h
c++/src/connect/ncbi_connutil.c
c++/src/connect/ncbi_core.c
c++/src/connect/ncbi_core_cxx.cpp
c++/src/connect/ncbi_file_connector.c
c++/src/connect/ncbi_ftp_connector.c
c++/src/connect/ncbi_gnutls.c
c++/src/connect/ncbi_heapmgr.c
c++/src/connect/ncbi_http2_session.cpp [new file with mode: 0644]
c++/src/connect/ncbi_http2_session_impl.hpp [new file with mode: 0644]
c++/src/connect/ncbi_http_connector.c
c++/src/connect/ncbi_http_session.cpp
c++/src/connect/ncbi_iprange.c
c++/src/connect/ncbi_lbos.c
c++/src/connect/ncbi_linkerd.c
c++/src/connect/ncbi_localip.c
c++/src/connect/ncbi_mbedtls.c
c++/src/connect/ncbi_namedpipe.cpp
c++/src/connect/ncbi_namedpipe_connector.cpp
c++/src/connect/ncbi_namerd.c
c++/src/connect/ncbi_once.h
c++/src/connect/ncbi_pipe.cpp
c++/src/connect/ncbi_pipe_connector.cpp
c++/src/connect/ncbi_priv.h
c++/src/connect/ncbi_sendmail.c
c++/src/connect/ncbi_service.c
c++/src/connect/ncbi_service_connector.c
c++/src/connect/ncbi_socket.c
c++/src/connect/ncbi_socket_connector.c
c++/src/connect/ncbi_socketp.h
c++/src/connect/ncbi_tls.c
c++/src/connect/ncbi_usage_report.cpp
c++/src/connect/ncbi_util.c
c++/src/connect/ncbi_uv_nghttp2.cpp [new file with mode: 0644]
c++/src/connect/ncbi_version.h
c++/src/connect/parson.c
c++/src/connect/services/CMakeLists.ncbi_xblobstorage_netcache.lib.txt
c++/src/connect/services/CMakeLists.ncbi_xcache_netcache.lib.txt
c++/src/connect/services/CMakeLists.txt
c++/src/connect/services/CMakeLists.xconnserv.lib.txt
c++/src/connect/services/grid_globals.cpp
c++/src/connect/services/grid_worker.cpp
c++/src/connect/services/grid_worker_impl.hpp
c++/src/connect/services/json_over_uttp.cpp
c++/src/connect/services/netcache_api.cpp
c++/src/connect/services/netcache_rw.cpp
c++/src/connect/services/neticache_client.cpp
c++/src/connect/services/netschedule_api_getjob.cpp
c++/src/connect/services/netschedule_api_getjob.hpp
c++/src/connect/services/netservice_api.cpp
c++/src/connect/services/netservice_api_impl.hpp
c++/src/connect/services/netservice_params.cpp
c++/src/connect/services/netservice_params.hpp
c++/src/connect/services/netstorage_rpc.cpp
c++/src/connect/services/netstorageobjectloc.cpp
c++/src/connect/services/srv_connections.cpp
c++/src/connect/services/srv_connections_impl.hpp
c++/src/connect/services/wn_commit_thread.cpp
c++/src/connect/services/wn_commit_thread.hpp
c++/src/connect/services/wn_main_loop.cpp
c++/src/corelib/CMakeLists.corelib.lib.txt
c++/src/corelib/CMakeLists.test_boost.lib.txt
c++/src/corelib/CMakeLists.test_mt.lib.txt
c++/src/corelib/CMakeLists.txt
c++/src/corelib/Makefile.corelib.lib
c++/src/corelib/env_reg.cpp
c++/src/corelib/interprocess_lock.cpp
c++/src/corelib/ncbi_base64.c
c++/src/corelib/ncbi_cookies.cpp
c++/src/corelib/ncbi_dbsvcmapper.cpp [new file with mode: 0644]
c++/src/corelib/ncbi_os_unix.cpp
c++/src/corelib/ncbi_param.cpp
c++/src/corelib/ncbi_pool_balancer.cpp [new file with mode: 0644]
c++/src/corelib/ncbi_stack.cpp
c++/src/corelib/ncbi_system.cpp
c++/src/corelib/ncbi_url.cpp
c++/src/corelib/ncbiapp.cpp
c++/src/corelib/ncbiargs.cpp
c++/src/corelib/ncbidiag.cpp
c++/src/corelib/ncbidiag_p.cpp
c++/src/corelib/ncbidiag_p.hpp
c++/src/corelib/ncbidll.cpp
c++/src/corelib/ncbienv.cpp
c++/src/corelib/ncbiexec.cpp
c++/src/corelib/ncbiexpt.cpp
c++/src/corelib/ncbifile.cpp
c++/src/corelib/ncbistr.cpp
c++/src/corelib/ncbistre.cpp
c++/src/corelib/ncbithr.cpp
c++/src/corelib/ncbitime.cpp
c++/src/corelib/request_ctx.cpp
c++/src/corelib/rwstreambuf.cpp
c++/src/corelib/stream_utils.cpp
c++/src/corelib/test_boost.cpp
c++/src/corelib/test_mt.cpp
c++/src/corelib/version.cpp
c++/src/db/CMakeLists.txt
c++/src/db/sqlite/CMakeLists.sqlitewrapp.lib.txt
c++/src/db/sqlite/CMakeLists.txt
c++/src/dbapi/CMakeLists.dbapi.lib.txt
c++/src/dbapi/CMakeLists.txt
c++/src/dbapi/Makefile.in
c++/src/dbapi/cache/CMakeLists.ncbi_xcache_dbapi.lib.txt [deleted file]
c++/src/dbapi/cache/CMakeLists.txt [deleted file]
c++/src/dbapi/cache/Makefile.in [deleted file]
c++/src/dbapi/cache/Makefile.ncbi_xcache_dbapi.lib [deleted file]
c++/src/dbapi/cache/dbapi_blob_cache.cpp [deleted file]
c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp [deleted file]
c++/src/dbapi/cache/mssql_create_tables.sql [deleted file]
c++/src/dbapi/driver/CMakeLists.dbapi_driver.lib.txt
c++/src/dbapi/driver/CMakeLists.txt
c++/src/dbapi/driver/dbapi_conn_factory.cpp
c++/src/dbapi/driver/dbapi_driver_utils.cpp
c++/src/dbapi/driver/dbapi_impl_context.cpp
c++/src/dbapi/driver/dbapi_pool_balancer.cpp
c++/src/dbapi/driver/exception.cpp
c++/src/dbapi/driver/ncbi_win_hook.cpp
c++/src/dbapi/driver/odbc/CMakeLists.ncbi_xdbapi_odbc.lib.txt
c++/src/dbapi/driver/odbc/CMakeLists.txt
c++/src/dbapi/driver/public.cpp
c++/src/dbapi/driver/types.cpp
c++/src/dbapi/variant.cpp
c++/src/html/CMakeLists.html.lib.txt
c++/src/html/CMakeLists.txt
c++/src/html/htmlhelper.cpp
c++/src/html/page.cpp
c++/src/html/pager.cpp
c++/src/misc/CMakeLists.txt
c++/src/misc/jsonwrapp/CMakeLists.txt
c++/src/misc/jsonwrapp/test/CMakeLists.test_jsonwrapp.app.txt
c++/src/misc/jsonwrapp/test/CMakeLists.test_jsonwrapp_old.app.txt
c++/src/misc/jsonwrapp/test/CMakeLists.txt
c++/src/misc/jsonwrapp/test/test_jsonwrapp.cpp
c++/src/misc/third_party/CMakeLists.txt
c++/src/misc/third_party_static/CMakeLists.txt
c++/src/objects/CMakeLists.txt
c++/src/objects/access/CMakeLists.access.asn.txt
c++/src/objects/access/CMakeLists.txt
c++/src/objects/biblio/CMakeLists.biblio.asn.txt
c++/src/objects/biblio/CMakeLists.txt
c++/src/objects/biotree/CMakeLists.biotree.asn.txt
c++/src/objects/biotree/CMakeLists.txt
c++/src/objects/blast/CMakeLists.blast.asn.txt
c++/src/objects/blast/CMakeLists.txt
c++/src/objects/blast/CMakeLists.xnetblastcli.lib.txt
c++/src/objects/blastdb/Blast_def_line.cpp
c++/src/objects/blastdb/CMakeLists.blastdb.asn.txt
c++/src/objects/blastdb/CMakeLists.txt
c++/src/objects/blastdb/blastdb.def
c++/src/objects/blastxml/CMakeLists.blastxml.asn.txt
c++/src/objects/blastxml/CMakeLists.txt
c++/src/objects/blastxml2/CMakeLists.blastxml2.asn.txt
c++/src/objects/blastxml2/CMakeLists.txt
c++/src/objects/blastxml2/blastxml2.def
c++/src/objects/cdd/CMakeLists.cdd.asn.txt
c++/src/objects/cdd/CMakeLists.txt
c++/src/objects/cn3d/CMakeLists.cn3d.asn.txt
c++/src/objects/cn3d/CMakeLists.txt
c++/src/objects/coords/CMakeLists.objcoords.asn.txt
c++/src/objects/coords/CMakeLists.txt
c++/src/objects/dbsnp/CMakeLists.txt
c++/src/objects/dbsnp/primary_track/CMakeLists.dbsnp_primary_track.lib.txt
c++/src/objects/dbsnp/primary_track/CMakeLists.txt
c++/src/objects/dbsnp/primary_track/Makefile.dbsnp.lib
c++/src/objects/dbsnp/primary_track/snpptis.cpp
c++/src/objects/docsum/CMakeLists.docsum.asn.txt
c++/src/objects/docsum/CMakeLists.txt
c++/src/objects/entrez2/CMakeLists.entrez2.asn.txt
c++/src/objects/entrez2/CMakeLists.entrez2cli.lib.txt
c++/src/objects/entrez2/CMakeLists.txt
c++/src/objects/entrez2/entrez2_client.cpp
c++/src/objects/entrezgene/CMakeLists.entrezgene.asn.txt
c++/src/objects/entrezgene/CMakeLists.txt
c++/src/objects/entrezgene/Entrezgene.cpp
c++/src/objects/entrezgene/Makefile.in
c++/src/objects/featdef/CMakeLists.featdef.asn.txt
c++/src/objects/featdef/CMakeLists.txt
c++/src/objects/gbproj/AbstractProjectItem.cpp
c++/src/objects/gbproj/CMakeLists.gbproj.asn.txt
c++/src/objects/gbproj/CMakeLists.txt
c++/src/objects/gbseq/CMakeLists.gbseq.asn.txt
c++/src/objects/gbseq/CMakeLists.txt
c++/src/objects/general/CMakeLists.general.asn.txt
c++/src/objects/general/CMakeLists.txt
c++/src/objects/general/Dbtag.cpp
c++/src/objects/genesbyloc/CMakeLists.genesbyloc.asn.txt
c++/src/objects/genesbyloc/CMakeLists.txt
c++/src/objects/genomecoll/CMakeLists.gencoll_client.asn.txt
c++/src/objects/genomecoll/CMakeLists.genome_collection.asn.txt
c++/src/objects/genomecoll/CMakeLists.txt
c++/src/objects/genomecoll/GC_Assembly.cpp
c++/src/objects/genomecoll/cached_assembly.cpp
c++/src/objects/genomecoll/gc_cli/CMakeLists.gc_cli.app.txt
c++/src/objects/genomecoll/gc_cli/Makefile.gc_cli.app
c++/src/objects/genomecoll/genome_collection.asn
c++/src/objects/genomecoll/genomic_collections_cli.cpp
c++/src/objects/homologene/CMakeLists.homologene.asn.txt
c++/src/objects/homologene/CMakeLists.txt
c++/src/objects/id1/CMakeLists.id1.asn.txt
c++/src/objects/id1/CMakeLists.id1cli.lib.txt
c++/src/objects/id1/CMakeLists.txt
c++/src/objects/id2/CMakeLists.id2.asn.txt
c++/src/objects/id2/CMakeLists.id2cli.lib.txt
c++/src/objects/id2/CMakeLists.txt
c++/src/objects/id2/Makefile.id2.lib
c++/src/objects/id2/id2_client.cpp
c++/src/objects/insdseq/CMakeLists.insdseq.asn.txt
c++/src/objects/insdseq/CMakeLists.txt
c++/src/objects/macro/CMakeLists.macro.asn.txt
c++/src/objects/macro/CMakeLists.txt
c++/src/objects/medlars/CMakeLists.medlars.asn.txt
c++/src/objects/medlars/CMakeLists.txt
c++/src/objects/medline/CMakeLists.medline.asn.txt
c++/src/objects/medline/CMakeLists.txt
c++/src/objects/mim/CMakeLists.mim.asn.txt
c++/src/objects/mim/CMakeLists.txt
c++/src/objects/mla/CMakeLists.mla.asn.txt
c++/src/objects/mla/CMakeLists.mlacli.lib.txt
c++/src/objects/mla/CMakeLists.txt
c++/src/objects/mmdb/CMakeLists.mmdb.lib.txt
c++/src/objects/mmdb/CMakeLists.txt
c++/src/objects/ncbimime/CMakeLists.ncbimime.asn.txt
c++/src/objects/ncbimime/CMakeLists.txt
c++/src/objects/objprt/CMakeLists.objprt.asn.txt
c++/src/objects/objprt/CMakeLists.txt
c++/src/objects/omssa/CMakeLists.omssa.asn.txt
c++/src/objects/omssa/CMakeLists.txt
c++/src/objects/pcassay/CMakeLists.pcassay.asn.txt
c++/src/objects/pcassay/CMakeLists.txt
c++/src/objects/pcsubstance/CMakeLists.pcsubstance.asn.txt
c++/src/objects/pcsubstance/CMakeLists.txt
c++/src/objects/pcsubstance/pcsubstance.asn
c++/src/objects/proj/CMakeLists.proj.asn.txt
c++/src/objects/proj/CMakeLists.txt
c++/src/objects/pub/CMakeLists.pub.asn.txt
c++/src/objects/pub/CMakeLists.txt
c++/src/objects/pub/Pub.cpp
c++/src/objects/pubmed/CMakeLists.pubmed.asn.txt
c++/src/objects/pubmed/CMakeLists.txt
c++/src/objects/remap/CMakeLists.remap.asn.txt
c++/src/objects/remap/CMakeLists.txt
c++/src/objects/scoremat/CMakeLists.scoremat.asn.txt
c++/src/objects/scoremat/CMakeLists.txt
c++/src/objects/seq/Bioseq.cpp
c++/src/objects/seq/CMakeLists.seq.asn.txt
c++/src/objects/seq/CMakeLists.txt
c++/src/objects/seq/Linkage_evidence.cpp
c++/src/objects/seq/Makefile.seq.lib
c++/src/objects/seq/seq_id_tree.cpp
c++/src/objects/seq/seq_id_tree.hpp
c++/src/objects/seq/seqport_util.cpp
c++/src/objects/seq/so_map.cpp
c++/src/objects/seqalign/Seq_align.cpp
c++/src/objects/seqcode/CMakeLists.seqcode.asn.txt
c++/src/objects/seqcode/CMakeLists.txt
c++/src/objects/seqedit/CMakeLists.seqedit.asn.txt
c++/src/objects/seqedit/CMakeLists.txt
c++/src/objects/seqfeat/BioSource.cpp
c++/src/objects/seqfeat/Genetic_code_table.cpp
c++/src/objects/seqfeat/OrgMod.cpp
c++/src/objects/seqfeat/Org_ref.cpp
c++/src/objects/seqfeat/RNA_gen.cpp
c++/src/objects/seqfeat/SeqFeatData.cpp
c++/src/objects/seqfeat/Seq_feat.cpp
c++/src/objects/seqfeat/SubSource.cpp
c++/src/objects/seqfeat/ecnum_ambiguous.inc
c++/src/objects/seqfeat/ecnum_ambiguous.txt
c++/src/objects/seqfeat/ecnum_deleted.inc
c++/src/objects/seqfeat/ecnum_deleted.txt
c++/src/objects/seqfeat/ecnum_replaced.inc
c++/src/objects/seqfeat/ecnum_replaced.txt
c++/src/objects/seqfeat/ecnum_specific.inc
c++/src/objects/seqfeat/ecnum_specific.txt
c++/src/objects/seqfeat/gc.inc
c++/src/objects/seqfeat/institution_codes.inc
c++/src/objects/seqfeat/institution_codes.txt
c++/src/objects/seqfeat/lat_lon_country.inc
c++/src/objects/seqloc/PDB_seq_id.cpp
c++/src/objects/seqloc/Patent_seq_id.cpp
c++/src/objects/seqloc/Seq_id.cpp
c++/src/objects/seqloc/Seq_loc.cpp
c++/src/objects/seqloc/accguide.inc [deleted file]
c++/src/objects/seqloc/accguide.txt
c++/src/objects/seqloc/accguide2.inc [new file with mode: 0644]
c++/src/objects/seqloc/accguide2.txt [new file with mode: 0644]
c++/src/objects/seqset/CMakeLists.seqset.asn.txt
c++/src/objects/seqset/CMakeLists.txt
c++/src/objects/seqset/Seq_entry.cpp
c++/src/objects/seqsplit/CMakeLists.seqsplit.asn.txt
c++/src/objects/seqsplit/CMakeLists.txt
c++/src/objects/seqtable/SeqTable_sparse_index.cpp
c++/src/objects/seqtest/CMakeLists.seqtest.asn.txt
c++/src/objects/seqtest/CMakeLists.txt
c++/src/objects/submit/CMakeLists.submit.asn.txt
c++/src/objects/submit/CMakeLists.txt
c++/src/objects/taxon1/CMakeLists.local_taxon.lib.txt
c++/src/objects/taxon1/CMakeLists.taxon1.asn.txt
c++/src/objects/taxon1/CMakeLists.txt
c++/src/objects/taxon1/cache.cpp
c++/src/objects/taxon1/cache.hpp
c++/src/objects/taxon1/local_taxon.cpp
c++/src/objects/taxon1/taxon1.cpp
c++/src/objects/taxon1/taxon1.def
c++/src/objects/taxon3/CMakeLists.taxon3.asn.txt
c++/src/objects/taxon3/CMakeLists.txt
c++/src/objects/taxon3/cached_taxon3.cpp
c++/src/objects/taxon3/taxon3.cpp
c++/src/objects/tinyseq/CMakeLists.tinyseq.asn.txt
c++/src/objects/tinyseq/CMakeLists.txt
c++/src/objects/trackmgr/CMakeLists.trackmgr.asn.txt
c++/src/objects/trackmgr/CMakeLists.trackmgrcli.lib.txt
c++/src/objects/trackmgr/CMakeLists.trackmgrgridcli.lib.txt
c++/src/objects/trackmgr/CMakeLists.txt
c++/src/objects/valerr/CMakeLists.txt
c++/src/objects/valerr/CMakeLists.valerr.asn.txt
c++/src/objects/valerr/ValidErrItem.cpp
c++/src/objects/valid/CMakeLists.txt
c++/src/objects/valid/CMakeLists.valid.asn.txt
c++/src/objects/valid/Comment_set.cpp
c++/src/objects/variation/CMakeLists.txt
c++/src/objects/variation/CMakeLists.variation.asn.txt
c++/src/objects/variation_libs/CMakeLists.txt
c++/src/objects/variation_libs/dbsnp/CMakeLists.txt
c++/src/objects/variation_libs/dbsnp/search_by_rsid/CMakeLists.search_by_rsid.asn.txt
c++/src/objects/variation_libs/dbsnp/search_by_rsid/CMakeLists.txt
c++/src/objects/variation_libs/dbsnp/tooltip_service/CMakeLists.dbsnp_tooltip_service.asn.txt
c++/src/objects/variation_libs/dbsnp/tooltip_service/CMakeLists.txt
c++/src/objects/varrep/CMakeLists.txt
c++/src/objects/varrep/CMakeLists.varrep.asn.txt
c++/src/objmgr/CMakeLists.objmgr.lib.txt
c++/src/objmgr/CMakeLists.txt
c++/src/objmgr/align_ci.cpp
c++/src/objmgr/annot_collector.cpp
c++/src/objmgr/annot_object.cpp
c++/src/objmgr/annot_selector.cpp
c++/src/objmgr/annot_types_ci.cpp
c++/src/objmgr/bioseq_info.cpp
c++/src/objmgr/bioseq_set_info.cpp
c++/src/objmgr/data_loader.cpp
c++/src/objmgr/data_source.cpp
c++/src/objmgr/graph_ci.cpp
c++/src/objmgr/scope.cpp
c++/src/objmgr/scope_impl.cpp
c++/src/objmgr/scope_info.cpp
c++/src/objmgr/seq_align_handle.cpp
c++/src/objmgr/seq_annot_handle.cpp
c++/src/objmgr/seq_annot_info.cpp
c++/src/objmgr/seq_entry_info.cpp
c++/src/objmgr/seq_feat_handle.cpp
c++/src/objmgr/seq_graph_handle.cpp
c++/src/objmgr/seq_table_info.cpp
c++/src/objmgr/snp_annot_info.cpp
c++/src/objmgr/split/CMakeLists.id2_split.lib.txt
c++/src/objmgr/split/CMakeLists.txt
c++/src/objmgr/split/blob_splitter_maker.cpp
c++/src/objmgr/tse_handle.cpp
c++/src/objmgr/tse_info.cpp
c++/src/objmgr/util/CMakeLists.txt
c++/src/objmgr/util/CMakeLists.util.lib.txt
c++/src/objmgr/util/autodef.cpp
c++/src/objmgr/util/autodef_available_modifier.cpp
c++/src/objmgr/util/autodef_feature_clause.cpp
c++/src/objmgr/util/autodef_feature_clause_base.cpp
c++/src/objmgr/util/autodef_mod_combo.cpp
c++/src/objmgr/util/autodef_options.cpp
c++/src/objmgr/util/autodef_source_desc.cpp
c++/src/objmgr/util/create_defline.cpp
c++/src/objmgr/util/feature.cpp
c++/src/objmgr/util/feature_edit.cpp
c++/src/objmgr/util/indexer.cpp
c++/src/objmgr/util/obj_sniff.cpp
c++/src/objmgr/util/sequence.cpp
c++/src/objtools/CMakeLists.txt
c++/src/objtools/Makefile.in
c++/src/objtools/align_format/CMakeLists.align_format.lib.txt
c++/src/objtools/align_format/CMakeLists.txt
c++/src/objtools/align_format/align_format_util.cpp
c++/src/objtools/align_format/seqalignfilter.cpp
c++/src/objtools/align_format/showalign.cpp
c++/src/objtools/align_format/showdefline.cpp
c++/src/objtools/align_format/tabular.cpp
c++/src/objtools/align_format/taxFormat.cpp
c++/src/objtools/align_format/unit_test/CMakeLists.align_format_unit_test.app.txt
c++/src/objtools/align_format/unit_test/CMakeLists.txt
c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp
c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp
c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp
c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp
c++/src/objtools/alnmgr/CMakeLists.alnmgr.lib.txt
c++/src/objtools/alnmgr/CMakeLists.txt
c++/src/objtools/alnmgr/alnvec.cpp
c++/src/objtools/alnmgr/score_builder_base.cpp
c++/src/objtools/blast/CMakeLists.txt
c++/src/objtools/blast/blastdb_format/CMakeLists.blastdb_format.lib.txt
c++/src/objtools/blast/blastdb_format/CMakeLists.txt
c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp
c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp
c++/src/objtools/blast/blastdb_format/seq_formatter.cpp
c++/src/objtools/blast/blastdb_format/seq_writer.cpp
c++/src/objtools/blast/blastdb_format/unit_test/CMakeLists.blastdb_format_unit_test.app.txt
c++/src/objtools/blast/blastdb_format/unit_test/CMakeLists.txt
c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp
c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp
c++/src/objtools/blast/gene_info_reader/CMakeLists.gene_info.lib.txt
c++/src/objtools/blast/gene_info_reader/CMakeLists.txt
c++/src/objtools/blast/gene_info_reader/demo/CMakeLists.gene_info_reader.app.txt
c++/src/objtools/blast/gene_info_reader/demo/CMakeLists.txt
c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp
c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp
c++/src/objtools/blast/gene_info_reader/unit_test/CMakeLists.gene_info_unit_test.app.txt
c++/src/objtools/blast/gene_info_reader/unit_test/CMakeLists.txt
c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp
c++/src/objtools/blast/seqdb_reader/CMakeLists.seqdb.lib.txt
c++/src/objtools/blast/seqdb_reader/CMakeLists.txt
c++/src/objtools/blast/seqdb_reader/demo/CMakeLists.seqdb_demo.app.txt
c++/src/objtools/blast/seqdb_reader/demo/CMakeLists.txt
c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp
c++/src/objtools/blast/seqdb_reader/seqdb.cpp
c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp
c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp
c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp
c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp
c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp
c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp
c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp
c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp
c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp
c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp
c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp
c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp
c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp
c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp
c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp
c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp
c++/src/objtools/blast/seqdb_reader/test/CMakeLists.seqdb_perf.app.txt
c++/src/objtools/blast/seqdb_reader/test/CMakeLists.txt
c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp
c++/src/objtools/blast/seqdb_writer/CMakeLists.txt
c++/src/objtools/blast/seqdb_writer/CMakeLists.writedb.lib.txt
c++/src/objtools/blast/seqdb_writer/build-alias-index
c++/src/objtools/blast/seqdb_writer/build_db.cpp
c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp
c++/src/objtools/blast/seqdb_writer/taxid_set.cpp
c++/src/objtools/blast/seqdb_writer/unit_test/CMakeLists.txt
c++/src/objtools/blast/seqdb_writer/unit_test/CMakeLists.writedb_lmdb_unit_test.app.txt
c++/src/objtools/blast/seqdb_writer/unit_test/CMakeLists.writedb_unit_test.app.txt
c++/src/objtools/blast/seqdb_writer/unit_test/Makefile.writedb_lmdb_unit_test.app
c++/src/objtools/blast/seqdb_writer/unit_test/Makefile.writedb_unit_test.app
c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp
c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp
c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp
c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp
c++/src/objtools/blast/services/CMakeLists.blast_services.lib.txt
c++/src/objtools/blast/services/CMakeLists.txt
c++/src/objtools/blast/services/unit_test/CMakeLists.blast_services_unit_test.app.txt
c++/src/objtools/blast/services/unit_test/CMakeLists.txt
c++/src/objtools/cleanup/CMakeLists.cleanup.lib.txt
c++/src/objtools/cleanup/CMakeLists.txt
c++/src/objtools/cleanup/Makefile.cleanup.lib
c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp
c++/src/objtools/cleanup/capitalization_string.cpp
c++/src/objtools/cleanup/cleanup.cpp
c++/src/objtools/cleanup/cleanup_author.cpp
c++/src/objtools/cleanup/cleanup_message.cpp
c++/src/objtools/cleanup/cleanup_pub.cpp
c++/src/objtools/cleanup/cleanup_user_object.cpp
c++/src/objtools/cleanup/cleanup_utils.cpp
c++/src/objtools/cleanup/cleanup_utils.hpp
c++/src/objtools/cleanup/fix_feature_id.cpp
c++/src/objtools/cleanup/gene_qual_normalization.cpp
c++/src/objtools/cleanup/newcleanupp.cpp
c++/src/objtools/cleanup/newcleanupp.hpp
c++/src/objtools/data_loaders/CMakeLists.txt
c++/src/objtools/data_loaders/blastdb/CMakeLists.ncbi_xloader_blastdb.lib.txt
c++/src/objtools/data_loaders/blastdb/CMakeLists.txt
c++/src/objtools/data_loaders/blastdb/bdbloader.cpp
c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp
c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp
c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp
c++/src/objtools/data_loaders/genbank/CMakeLists.ncbi_xloader_genbank.lib.txt
c++/src/objtools/data_loaders/genbank/CMakeLists.ncbi_xreader.lib.txt
c++/src/objtools/data_loaders/genbank/CMakeLists.txt
c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib
c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.mk
c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
c++/src/objtools/data_loaders/genbank/blob_id.cpp
c++/src/objtools/data_loaders/genbank/cache/CMakeLists.ncbi_xreader_cache.lib.txt
c++/src/objtools/data_loaders/genbank/cache/CMakeLists.txt
c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp
c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp
c++/src/objtools/data_loaders/genbank/dispatcher.cpp
c++/src/objtools/data_loaders/genbank/gbloader.cpp
c++/src/objtools/data_loaders/genbank/gbnative.cpp
c++/src/objtools/data_loaders/genbank/gicache/CMakeLists.ncbi_xreader_gicache.lib.txt
c++/src/objtools/data_loaders/genbank/gicache/CMakeLists.txt
c++/src/objtools/data_loaders/genbank/gicache/gicache.c
c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp
c++/src/objtools/data_loaders/genbank/id1/CMakeLists.ncbi_xreader_id1.lib.txt
c++/src/objtools/data_loaders/genbank/id1/CMakeLists.txt
c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp
c++/src/objtools/data_loaders/genbank/id2/CMakeLists.ncbi_xreader_id2.lib.txt
c++/src/objtools/data_loaders/genbank/id2/CMakeLists.txt
c++/src/objtools/data_loaders/genbank/processors.cpp
c++/src/objtools/data_loaders/genbank/psg_loader.cpp
c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp
c++/src/objtools/data_loaders/genbank/reader.cpp
c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp
c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp
c++/src/objtools/data_loaders/genbank/reader_snp.cpp
c++/src/objtools/data_loaders/genbank/request_result.cpp
c++/src/objtools/data_loaders/genbank/seqref.cpp
c++/src/objtools/data_loaders/genbank/wgsmaster.cpp [new file with mode: 0644]
c++/src/objtools/edit/CMakeLists.edit.lib.txt
c++/src/objtools/edit/CMakeLists.txt
c++/src/objtools/edit/Makefile.edit.lib
c++/src/objtools/edit/apply_object.cpp
c++/src/objtools/edit/autodef_with_tax.cpp
c++/src/objtools/edit/cds_fix.cpp
c++/src/objtools/edit/dblink_field.cpp
c++/src/objtools/edit/external_annots.cpp
c++/src/objtools/edit/feattable_edit.cpp
c++/src/objtools/edit/feature_propagate.cpp
c++/src/objtools/edit/field_handler.cpp
c++/src/objtools/edit/gap_trim.cpp
c++/src/objtools/edit/gaps_edit.cpp
c++/src/objtools/edit/gb_block_field.cpp
c++/src/objtools/edit/gene_utils.cpp
c++/src/objtools/edit/link_cds_mrna.cpp
c++/src/objtools/edit/loc_edit.cpp
c++/src/objtools/edit/mail_report.cpp
c++/src/objtools/edit/parse_text_options.cpp
c++/src/objtools/edit/promote.cpp
c++/src/objtools/edit/pub_fix.cpp [new file with mode: 0644]
c++/src/objtools/edit/pub_fix_aux.hpp [new file with mode: 0644]
c++/src/objtools/edit/publication_edit.cpp
c++/src/objtools/edit/remote_updater.cpp
c++/src/objtools/edit/rna_edit.cpp
c++/src/objtools/edit/seq_edit.cpp
c++/src/objtools/edit/seq_entry_edit.cpp
c++/src/objtools/edit/seqid_guesser.cpp
c++/src/objtools/edit/source_edit.cpp
c++/src/objtools/edit/string_constraint.cpp
c++/src/objtools/edit/struc_comm_field.cpp
c++/src/objtools/edit/text_desc_field.cpp
c++/src/objtools/edit/text_object_description.cpp
c++/src/objtools/eutils/CMakeLists.txt [new file with mode: 0644]
c++/src/objtools/eutils/Makefile.in [new file with mode: 0644]
c++/src/objtools/eutils/api/CMakeLists.eutils.lib.txt [new file with mode: 0644]
c++/src/objtools/eutils/api/CMakeLists.txt [new file with mode: 0644]
c++/src/objtools/eutils/api/Makefile.eutils.lib [new file with mode: 0644]
c++/src/objtools/eutils/api/Makefile.in [new file with mode: 0644]
c++/src/objtools/eutils/api/efetch.cpp [new file with mode: 0644]
c++/src/objtools/eutils/api/egquery.cpp [new file with mode: 0644]
c++/src/objtools/eutils/api/ehistory.cpp [new file with mode: 0644]
c++/src/objtools/eutils/api/einfo.cpp [new file with mode: 0644]
c++/src/objtools/eutils/api/elink.cpp [new file with mode: 0644]
c++/src/objtools/eutils/api/epost.cpp [new file with mode: 0644]
c++/src/objtools/eutils/api/esearch.cpp [new file with mode: 0644]
c++/src/objtools/eutils/api/espell.cpp [new file with mode: 0644]
c++/src/objtools/eutils/api/esummary.cpp [new file with mode: 0644]
c++/src/objtools/eutils/api/eutils.cpp [new file with mode: 0644]
c++/src/objtools/eutils/egquery/CMakeLists.egquery.asn.txt [new file with mode: 0644]
c++/src/objtools/eutils/egquery/CMakeLists.txt [new file with mode: 0644]
c++/src/objtools/eutils/egquery/Makefile.egquery.lib [new file with mode: 0644]
c++/src/objtools/eutils/egquery/Makefile.in [new file with mode: 0644]
c++/src/objtools/eutils/egquery/egquery.def [new file with mode: 0644]
c++/src/objtools/eutils/egquery/egquery.dtd [new file with mode: 0644]
c++/src/objtools/eutils/ehistory/CMakeLists.ehistory.asn.txt [new file with mode: 0644]
c++/src/objtools/eutils/ehistory/CMakeLists.txt [new file with mode: 0644]
c++/src/objtools/eutils/ehistory/Makefile.ehistory.lib [new file with mode: 0644]
c++/src/objtools/eutils/ehistory/Makefile.in [new file with mode: 0644]
c++/src/objtools/eutils/ehistory/ehistory.def [new file with mode: 0644]
c++/src/objtools/eutils/ehistory/ehistory.dtd [new file with mode: 0644]
c++/src/objtools/eutils/einfo/CMakeLists.einfo.asn.txt [new file with mode: 0644]
c++/src/objtools/eutils/einfo/CMakeLists.txt [new file with mode: 0644]
c++/src/objtools/eutils/einfo/Makefile.einfo.lib [new file with mode: 0644]
c++/src/objtools/eutils/einfo/Makefile.in [new file with mode: 0644]
c++/src/objtools/eutils/einfo/einfo.def [new file with mode: 0644]
c++/src/objtools/eutils/einfo/einfo.dtd [new file with mode: 0644]
c++/src/objtools/eutils/elink/CMakeLists.elink.asn.txt [new file with mode: 0644]
c++/src/objtools/eutils/elink/CMakeLists.txt [new file with mode: 0644]
c++/src/objtools/eutils/elink/Makefile.elink.lib [new file with mode: 0644]
c++/src/objtools/eutils/elink/Makefile.in [new file with mode: 0644]
c++/src/objtools/eutils/elink/elink.def [new file with mode: 0644]
c++/src/objtools/eutils/elink/elink.dtd [new file with mode: 0644]
c++/src/objtools/eutils/epost/CMakeLists.epost.asn.txt [new file with mode: 0644]
c++/src/objtools/eutils/epost/CMakeLists.txt [new file with mode: 0644]
c++/src/objtools/eutils/epost/Makefile.epost.lib [new file with mode: 0644]
c++/src/objtools/eutils/epost/Makefile.in [new file with mode: 0644]
c++/src/objtools/eutils/epost/epost.def [new file with mode: 0644]
c++/src/objtools/eutils/epost/epost.dtd [new file with mode: 0644]
c++/src/objtools/eutils/esearch/CMakeLists.esearch.asn.txt [new file with mode: 0644]
c++/src/objtools/eutils/esearch/CMakeLists.txt [new file with mode: 0644]
c++/src/objtools/eutils/esearch/Makefile.esearch.lib [new file with mode: 0644]
c++/src/objtools/eutils/esearch/Makefile.in [new file with mode: 0644]
c++/src/objtools/eutils/esearch/esearch.def [new file with mode: 0644]
c++/src/objtools/eutils/esearch/esearch.dtd [new file with mode: 0644]
c++/src/objtools/eutils/espell/CMakeLists.espell.asn.txt [new file with mode: 0644]
c++/src/objtools/eutils/espell/CMakeLists.txt [new file with mode: 0644]
c++/src/objtools/eutils/espell/Makefile.espell.lib [new file with mode: 0644]
c++/src/objtools/eutils/espell/Makefile.in [new file with mode: 0644]
c++/src/objtools/eutils/espell/espell.def [new file with mode: 0644]
c++/src/objtools/eutils/espell/espell.dtd [new file with mode: 0644]
c++/src/objtools/eutils/esummary/CMakeLists.esummary.asn.txt [new file with mode: 0644]
c++/src/objtools/eutils/esummary/CMakeLists.txt [new file with mode: 0644]
c++/src/objtools/eutils/esummary/DocSum.cpp [new file with mode: 0644]
c++/src/objtools/eutils/esummary/Item.cpp [new file with mode: 0644]
c++/src/objtools/eutils/esummary/Makefile.esummary.lib [new file with mode: 0644]
c++/src/objtools/eutils/esummary/Makefile.in [new file with mode: 0644]
c++/src/objtools/eutils/esummary/esummary.def [new file with mode: 0644]
c++/src/objtools/eutils/esummary/esummary.dtd [new file with mode: 0644]
c++/src/objtools/eutils/uilist/CMakeLists.txt [new file with mode: 0644]
c++/src/objtools/eutils/uilist/CMakeLists.uilist.asn.txt [new file with mode: 0644]
c++/src/objtools/eutils/uilist/Makefile.in [new file with mode: 0644]
c++/src/objtools/eutils/uilist/Makefile.uilist.lib [new file with mode: 0644]
c++/src/objtools/eutils/uilist/uilist.def [new file with mode: 0644]
c++/src/objtools/eutils/uilist/uilist.dtd [new file with mode: 0644]
c++/src/objtools/format/CMakeLists.txt
c++/src/objtools/format/CMakeLists.xformat.lib.txt
c++/src/objtools/format/comment_item.cpp
c++/src/objtools/format/context.cpp
c++/src/objtools/format/dbsource_item.cpp
c++/src/objtools/format/defline_item.cpp
c++/src/objtools/format/feature_item.cpp
c++/src/objtools/format/flat_file_config.cpp
c++/src/objtools/format/flat_file_generator.cpp
c++/src/objtools/format/flat_qual_slots.cpp
c++/src/objtools/format/flat_seqloc.cpp
c++/src/objtools/format/gather_items.cpp
c++/src/objtools/format/gbseq_formatter.cpp
c++/src/objtools/format/genbank_formatter.cpp
c++/src/objtools/format/genbank_gather.cpp
c++/src/objtools/format/genome_project_item.cpp
c++/src/objtools/format/inst_info_map.cpp
c++/src/objtools/format/inst_info_map.hpp
c++/src/objtools/format/item_formatter.cpp
c++/src/objtools/format/keywords_item.cpp
c++/src/objtools/format/primary_item.cpp
c++/src/objtools/format/qualifiers.cpp
c++/src/objtools/format/reference_item.cpp
c++/src/objtools/format/source_item.cpp
c++/src/objtools/logging/CMakeLists.logging.lib.txt
c++/src/objtools/logging/CMakeLists.txt
c++/src/objtools/logging/listener.cpp
c++/src/objtools/logging/message.cpp
c++/src/objtools/pubseq_gateway/CMakeLists.txt
c++/src/objtools/pubseq_gateway/client/CMakeLists.psg_client.lib.txt
c++/src/objtools/pubseq_gateway/client/CMakeLists.txt
c++/src/objtools/pubseq_gateway/client/Makefile.psg_client.lib
c++/src/objtools/pubseq_gateway/client/Makefile.psg_client_macros.mk
c++/src/objtools/pubseq_gateway/client/psg_client.cpp
c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp
c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp
c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp
c++/src/objtools/pubseq_gateway/client/test/CMakeLists.test_psg_client_impl.app.txt
c++/src/objtools/pubseq_gateway/client/test/CMakeLists.txt
c++/src/objtools/pubseq_gateway/client/test/Makefile.test_psg_client_impl.app
c++/src/objtools/pubseq_gateway/client/test/test_psg_client_impl.cpp
c++/src/objtools/readers/CMakeLists.txt
c++/src/objtools/readers/CMakeLists.xobjread.lib.txt
c++/src/objtools/readers/CMakeLists.xobjreadex.lib.txt
c++/src/objtools/readers/Makefile.xobjread.lib
c++/src/objtools/readers/agp_converter.cpp
c++/src/objtools/readers/agp_read.cpp
c++/src/objtools/readers/agp_seq_entry.cpp
c++/src/objtools/readers/agp_util.cpp
c++/src/objtools/readers/agp_validate_reader.cpp
c++/src/objtools/readers/aln_error_reporter.cpp
c++/src/objtools/readers/aln_errors.cpp
c++/src/objtools/readers/aln_formatguess.cpp
c++/src/objtools/readers/aln_reader.cpp
c++/src/objtools/readers/aln_scanner.cpp
c++/src/objtools/readers/aln_scanner_clustal.cpp
c++/src/objtools/readers/aln_scanner_clustal.hpp
c++/src/objtools/readers/aln_scanner_fastagap.cpp
c++/src/objtools/readers/aln_scanner_multalign.cpp
c++/src/objtools/readers/aln_scanner_nexus.cpp
c++/src/objtools/readers/aln_scanner_nexus.hpp
c++/src/objtools/readers/aln_scanner_phylip.cpp
c++/src/objtools/readers/aln_scanner_sequin.cpp
c++/src/objtools/readers/aln_scanner_sequin.hpp
c++/src/objtools/readers/aln_util.cpp
c++/src/objtools/readers/alnread.cpp
c++/src/objtools/readers/bed_autosql.cpp [new file with mode: 0644]
c++/src/objtools/readers/bed_autosql.hpp [new file with mode: 0644]
c++/src/objtools/readers/bed_autosql_custom.cpp [new file with mode: 0644]
c++/src/objtools/readers/bed_autosql_custom.hpp [new file with mode: 0644]
c++/src/objtools/readers/bed_autosql_standard.cpp [new file with mode: 0644]
c++/src/objtools/readers/bed_autosql_standard.hpp [new file with mode: 0644]
c++/src/objtools/readers/bed_column_data.cpp [new file with mode: 0644]
c++/src/objtools/readers/bed_column_data.hpp [new file with mode: 0644]
c++/src/objtools/readers/bed_reader.cpp
c++/src/objtools/readers/best_feat_finder.cpp
c++/src/objtools/readers/descr_mod_apply.cpp
c++/src/objtools/readers/descr_mod_apply.hpp
c++/src/objtools/readers/fasta.cpp
c++/src/objtools/readers/fasta_exception.cpp
c++/src/objtools/readers/fasta_reader_utils.cpp
c++/src/objtools/readers/feature_mod_apply.cpp
c++/src/objtools/readers/format_guess_ex.cpp
c++/src/objtools/readers/getfeature.cpp
c++/src/objtools/readers/gff2_data.cpp
c++/src/objtools/readers/gff2_reader.cpp
c++/src/objtools/readers/gff3_location_merger.cpp [new file with mode: 0644]
c++/src/objtools/readers/gff3_location_merger.hpp [new file with mode: 0644]
c++/src/objtools/readers/gff3_reader.cpp
c++/src/objtools/readers/gff3_sofa.cpp
c++/src/objtools/readers/gff_base_columns.cpp
c++/src/objtools/readers/gff_reader.cpp
c++/src/objtools/readers/glimmer_reader.cpp
c++/src/objtools/readers/gtf_location_merger.cpp [new file with mode: 0644]
c++/src/objtools/readers/gtf_location_merger.hpp [new file with mode: 0644]
c++/src/objtools/readers/gtf_reader.cpp
c++/src/objtools/readers/gvf_reader.cpp
c++/src/objtools/readers/idmapper.cpp
c++/src/objtools/readers/idmapper_config.cpp
c++/src/objtools/readers/idmapper_gcassembly.cpp
c++/src/objtools/readers/idmapper_scope.cpp
c++/src/objtools/readers/line_error.cpp
c++/src/objtools/readers/message_listener.cpp
c++/src/objtools/readers/microarray_reader.cpp
c++/src/objtools/readers/mod_reader.cpp
c++/src/objtools/readers/mod_to_enum.cpp
c++/src/objtools/readers/mod_to_enum.hpp
c++/src/objtools/readers/phrap.cpp
c++/src/objtools/readers/psl_data.cpp
c++/src/objtools/readers/psl_data.hpp
c++/src/objtools/readers/psl_reader.cpp
c++/src/objtools/readers/read_util.cpp
c++/src/objtools/readers/reader_base.cpp
c++/src/objtools/readers/reader_message.cpp
c++/src/objtools/readers/reader_message_handler.cpp
c++/src/objtools/readers/readfeat.cpp
c++/src/objtools/readers/rm_reader.cpp
c++/src/objtools/readers/seqid_validate.cpp
c++/src/objtools/readers/source_mod_parser.cpp
c++/src/objtools/readers/source_mod_parser.hpp
c++/src/objtools/readers/source_mod_parser_wrapper.cpp
c++/src/objtools/readers/track_data.cpp
c++/src/objtools/readers/ucscregion_reader.cpp
c++/src/objtools/readers/vcf_reader.cpp
c++/src/objtools/readers/wiggle_reader.cpp
c++/src/objtools/seqmasks_io/CMakeLists.seqmasks_io.lib.txt
c++/src/objtools/seqmasks_io/CMakeLists.txt
c++/src/objtools/simple/CMakeLists.txt
c++/src/objtools/simple/CMakeLists.xobjsimple.lib.txt
c++/src/serial/CMakeLists.cserial.lib.txt
c++/src/serial/CMakeLists.serial.lib.txt
c++/src/serial/CMakeLists.txt
c++/src/serial/aliasinfo.cpp
c++/src/serial/autoptrinfo.cpp
c++/src/serial/datatool/CMakeLists.datatool.app.txt
c++/src/serial/datatool/CMakeLists.txt
c++/src/serial/datatool/choicestr.cpp
c++/src/serial/datatool/datatool.cpp
c++/src/serial/datatool/dtdparser.cpp
c++/src/serial/datatool/enumtype.cpp
c++/src/serial/datatool/lexer.cpp
c++/src/serial/datatool/rpcgen.cpp
c++/src/serial/datatool/statictype.cpp
c++/src/serial/datatool/type.cpp
c++/src/serial/enumerated.cpp
c++/src/serial/grpc_integration/CMakeLists.grpc_integration.lib.txt
c++/src/serial/grpc_integration/CMakeLists.txt
c++/src/serial/grpc_integration/grpc_integration.cpp
c++/src/serial/objistr.cpp
c++/src/serial/objistrjson.cpp
c++/src/serial/objistrxml.cpp
c++/src/serial/objostr.cpp
c++/src/serial/objostrasn.cpp
c++/src/serial/objostrasnb.cpp
c++/src/serial/objostrjson.cpp
c++/src/serial/objostrxml.cpp
c++/src/serial/rpcbase.cpp
c++/src/serial/stdtypes.cpp
c++/src/util/CMakeLists.txt
c++/src/util/CMakeLists.util.lib.txt
c++/src/util/Makefile.in
c++/src/util/bitset/CMakeLists.txt
c++/src/util/checksum.cpp
c++/src/util/compress/CMakeLists.txt
c++/src/util/compress/api/CMakeLists.compress.lib.txt
c++/src/util/compress/api/CMakeLists.txt
c++/src/util/compress/api/archive_.cpp
c++/src/util/compress/api/archive_zip.cpp
c++/src/util/compress/api/archive_zip.hpp
c++/src/util/compress/api/bzip2.cpp
c++/src/util/compress/api/lzo.cpp
c++/src/util/compress/api/miniz/LICENSE [new file with mode: 0644]
c++/src/util/compress/api/miniz/miniz.c
c++/src/util/compress/api/miniz/miniz.h [new file with mode: 0644]
c++/src/util/compress/api/miniz/miniz_common.h [new file with mode: 0644]
c++/src/util/compress/api/miniz/miniz_export.h [new file with mode: 0644]
c++/src/util/compress/api/miniz/miniz_tdef.c [new file with mode: 0644]
c++/src/util/compress/api/miniz/miniz_tdef.h [new file with mode: 0644]
c++/src/util/compress/api/miniz/miniz_tinfl.c [new file with mode: 0644]
c++/src/util/compress/api/miniz/miniz_tinfl.h [new file with mode: 0644]
c++/src/util/compress/api/miniz/miniz_zip.c [new file with mode: 0644]
c++/src/util/compress/api/miniz/miniz_zip.h [new file with mode: 0644]
c++/src/util/compress/api/stream.cpp
c++/src/util/compress/api/streambuf.cpp
c++/src/util/compress/api/streambuf.hpp
c++/src/util/compress/api/tar.cpp
c++/src/util/compress/api/zlib.cpp
c++/src/util/compress/bzip2/CMakeLists.bzip2.lib.txt
c++/src/util/compress/bzip2/CMakeLists.txt
c++/src/util/compress/zlib/CMakeLists.txt
c++/src/util/compress/zlib/CMakeLists.zlib.lib.txt
c++/src/util/creaders/CMakeLists.creaders.lib.txt
c++/src/util/creaders/CMakeLists.txt
c++/src/util/format_guess.cpp
c++/src/util/lmdb/CMakeLists.lmdb.lib.txt
c++/src/util/lmdb/CMakeLists.lmdb_test1.app.txt
c++/src/util/lmdb/CMakeLists.lmdb_test2.app.txt
c++/src/util/lmdb/CMakeLists.lmdb_test3.app.txt
c++/src/util/lmdb/CMakeLists.lmdb_test4.app.txt
c++/src/util/lmdb/CMakeLists.lmdb_test5.app.txt
c++/src/util/lmdb/CMakeLists.lmdb_test6.app.txt
c++/src/util/lmdb/CMakeLists.txt
c++/src/util/lmdb/Makefile.in
c++/src/util/lmdb/mdb.c
c++/src/util/lmdbxx/CMakeLists.lmdbxx_sample.app.txt
c++/src/util/lmdbxx/CMakeLists.txt
c++/src/util/profile/CMakeLists.txt [new file with mode: 0644]
c++/src/util/profile/CMakeLists.utrtprof.lib.txt [new file with mode: 0644]
c++/src/util/profile/Makefile.in [new file with mode: 0644]
c++/src/util/profile/Makefile.utrtprof.lib [new file with mode: 0644]
c++/src/util/profile/rtprofile.cpp [new file with mode: 0644]
c++/src/util/regexp/CMakeLists.regexp.lib.txt
c++/src/util/regexp/CMakeLists.test_pcre.app.txt
c++/src/util/regexp/CMakeLists.txt
c++/src/util/scheduler.cpp
c++/src/util/sequtil/CMakeLists.sequtil.lib.txt
c++/src/util/sequtil/CMakeLists.txt
c++/src/util/tables/CMakeLists.tables.lib.txt
c++/src/util/tables/CMakeLists.txt
c++/src/util/thread_pool.cpp
c++/src/util/unicode.cpp
c++/src/util/xregexp/CMakeLists.txt
c++/src/util/xregexp/CMakeLists.xregexp.lib.txt
c++/src/util/xregexp/CMakeLists.xregexp_template_tester.lib.txt
c++/src/util/xregexp/Makefile.xregexp.lib
c++/src/util/xregexp/convert_dates_iso8601.cpp [new file with mode: 0644]
c++/src/util/xregexp/regexp.cpp